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Retraction: Genome-wide identification of RETINOBLASTOMA RELATED 1 binding sites in Arabidopsis reveals novel DNA damage regulators

• Source: PLOS Genetics ; volume 22, issue 1, page e1012022 ; ISSN 1553-7404

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Positional distribution of transcription factor binding sites in the human genome

• Authors : Yu, Chun-Ping; Soh, Zhi Thong; Bhattacharjee, Maloyjo Joyraj ...

• Source: PLOS One ; volume 20, issue 7, page e0329226 ; ISSN 1932-6203

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iProtDNA-SMOTE: Enhancing protein-DNA binding sites prediction through imbalanced graph neural networks

• Authors : Huang, Ruiyan; Qiu, Wangren; Xiao, Xuan ...

• Source: PLOS One ; volume 20, issue 5, page e0320817 ; ISSN 1932-6203

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Molecular dynamics simulations of human cohesin subunits identify DNA binding sites and their potential roles in DNA loop extrusion

• Authors : Gu, Chenyang; Takada, Shoji; Brandani, Giovanni B. ...

• Source: PLOS Computational Biology ; volume 21, issue 4, page e1012493 ; ISSN 1553-7358

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OneProt: Towards multi-modal protein foundation models via latent space alignment of sequence, structure, binding sites and text encoders

• Authors : Flöge, Klemens; Udayakumar, Srisruthi; Sommer, Johanna ...

• Source: PLOS Computational Biology ; volume 21, issue 11, page e1013679 ; ISSN 1553-7358

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The actin binding sites of talin have both distinct and complementary roles in cell-ECM adhesion

• Authors : Camp, Darius; Venkatesh, Bhavya; Solianova, Veronika ...

• Source: PLOS Genetics ; volume 20, issue 4, page e1011224 ; ISSN 1553-7404

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Transcription factor interactions explain the context-dependent activity of CRX binding sites

• Authors : Loell, Kaiser J.; Friedman, Ryan Z.; Myers, Connie A. ...

• Source: PLOS Computational Biology ; volume 20, issue 1, page e1011802 ; ISSN 1553-7358

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Systematic evaluation of lecithin:cholesterol acyltransferase binding sites in apolipoproteins via peptide based nanodiscs: regulatory role of charged residues at positions 4 and 7

• Authors : Niemelä, Akseli; Koivuniemi, Artturi;

• Source: PLOS Computational Biology ; volume 20, issue 5, page e1012137 ; ISSN 1553-7358

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Whole genome profiling of short-term hypoxia induced genes and identification of HIF-1 binding sites provide insights into HIF-1 function in Caenorhabditis elegans

• Authors : Feng, Dingxia; Qu, Long; Powell-Coffman, Jo Anne ...

• Source: PLOS ONE ; volume 19, issue 5, page e0295094 ; ISSN 1932-6203

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Genome-wide census of ATF4 binding sites and functional profiling of trait-associated genetic variants overlapping ATF4 binding motifs

• Authors : Örd, Tiit; Örd, Daima; Adler, Priit ...

• Source: PLOS Genetics ; volume 19, issue 10, page e1011014 ; ISSN 1553-7404

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