Cell shape analysis

Cell shape analysis --- This package contains custom-written code associated with the paper "Direct observation of a crescent-shape chromosome in Bacillus subtilis" By Tišma et al. 2023 See README's in subdirectories for specific content description --- Notes: * Disclaimer: this code was custom written and shared to illustrate used algorithms, analysis pathways, etc. in relation to published results. The code was regularly used and tested. However, small bugs, not relevant for the data analysis as present in publications may still be around. Code may rely on local platform organizations and may show initial bugs while running immediately after downloading. Nevertheless, the code can be adapted for further use by interested users with sufficient knowledge of Matlab programming. * Exclusions: the code is complete except for public external code used in this software or for preparatory data: Not included packages: -Oufti -Fiji(ImageJ) -Dip_image analysis software Not included local Matlab code: -srv_plot Copyright (c) 2005, Juerg Schwizer (to be added in common_tools\srv_plot) Contributions --- crop_code: * code originally written and assembled by F. Wu and X. Zheng, * re-edited and expanded by Jacob Kerssemakers donut_code, replicode: * witten by Jacob Kerssemakers