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A simple model of cardiac mitochondrial respiration with experimental validation

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  • Additional Information
    • Contributors:
      Modélisation et calculs pour l'électrophysiologie cardiaque (CARMEN); Institut de Mathématiques de Bordeaux (IMB); Université Bordeaux Segalen - Bordeaux 2-Université Sciences et Technologies - Bordeaux 1 (UB)-Université de Bordeaux (UB)-Institut Polytechnique de Bordeaux (Bordeaux INP)-Centre National de la Recherche Scientifique (CNRS)-Université Bordeaux Segalen - Bordeaux 2-Université Sciences et Technologies - Bordeaux 1 (UB)-Université de Bordeaux (UB)-Institut Polytechnique de Bordeaux (Bordeaux INP)-Centre National de la Recherche Scientifique (CNRS)-Inria Bordeaux - Sud-Ouest; Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-IHU-LIRYC; Université Bordeaux Segalen - Bordeaux 2-CHU Bordeaux-CHU Bordeaux; Université Bordeaux Segalen - Bordeaux 2-Université Sciences et Technologies - Bordeaux 1 (UB)-Université de Bordeaux (UB)-Institut Polytechnique de Bordeaux (Bordeaux INP)-Centre National de la Recherche Scientifique (CNRS); IHU-LIRYC; Université Bordeaux Segalen - Bordeaux 2-CHU Bordeaux; Institut des Sciences Moléculaires (ISM); Université Montesquieu - Bordeaux 4-Université Sciences et Technologies - Bordeaux 1 (UB)-École Nationale Supérieure de Chimie et de Physique de Bordeaux (ENSCPB)-Institut de Chimie - CNRS Chimie (INC-CNRS)-Centre National de la Recherche Scientifique (CNRS); Institut de rythmologie et modélisation cardiaque Pessac (IHU Liryc); Université de Bordeaux (UB); Centre de recherche Cardio-Thoracique de Bordeaux Bordeaux (CRCTB); Université Bordeaux Segalen - Bordeaux 2-CHU Bordeaux-Institut National de la Santé et de la Recherche Médicale (INSERM); This study received financial support from the French Government as part of the “Investments of the Future” program managed by the Agence Nationale de la Recherche grant ANR-10-IAHU-04 and also from the project MITOCARD (ANR-17-CE11-0041).; ANR-10-IAHU-0004,LIRYC,L'Institut de Rythmologie et modélisation Cardiaque(2010); ANR-17-CE11-0041,MITOCARD,Electrophysiologie de la Mitochondrie Cardiaque(2017)
    • Publication Information:
      HAL CCSD
      AIMS Press
    • Publication Date:
      2021
    • Collection:
      Inserm: HAL (Institut national de la santé et de la recherche médicale)
    • Abstract:
      International audience ; Cardiac mitochondria are intracellular organelles that play an important role in energy metabolism and cellular calcium regulation. In particular, they influence the excitation-contraction cycle of the heart cell. A large number of mathematical models have been proposed to better understand the mitochondrial dynamics, but they generally show a high level of complexity, and their parameters are very hard to fit to experimental data.We derived a model based on historical free energy-transduction principles, and results from the literature. We proposed simple expressions that allow to reduce the number of parameters to a minimum with respect to the mitochondrial behavior of interest for us. The resulting model has thirty-two parameters, which are reduced to twenty-three after a global sensitivity analysis of its expressions based on Sobol indices.We calibrated our model to experimental data that consists of measurements of mitochondrial respiration rates controlled by external ADP additions. A sensitivity analysis of the respiration rates showed that only seven parameters can be identified using these observations. We calibrated them using a genetic algorithm, with five experimental data sets. At last, we used the calibration results to verify the ability of the model to accurately predict the values of a sixth dataset.Results show that our model is able to reproduce both respiration rates of mitochondria and transitions between those states, with very low variability of the parameters between each experiment. The same methodology may apply to recover all the parameters of the model, if corresponding experimental data were available.
    • Relation:
      hal-03272432; https://inria.hal.science/hal-03272432; https://inria.hal.science/hal-03272432/document; https://inria.hal.science/hal-03272432/file/10.3934_mbe.2021291.pdf
    • Accession Number:
      10.3934/mbe.2021291
    • Online Access:
      https://doi.org/10.3934/mbe.2021291
      https://inria.hal.science/hal-03272432
      https://inria.hal.science/hal-03272432/document
    • Rights:
      info:eu-repo/semantics/OpenAccess
    • Accession Number:
      edsbas.3A30291B