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A classification algorithm based on dynamic ensemble selection to predict mutational patterns of the envelope protein in HIV-infected patients

• Authors : Mohammad Fili; Guiping Hu; Changze Han

Subjects: Classification algorithm; Dynamic ensemble selection; HIV-1

• Source: Algorithms for Molecular Biology, Vol 18, Iss 1, Pp 1-17 (2023)

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Wrapper-based selection of genetic features in genome-wide association studies through fast matrix operations.

• Authors : Pahikkala, Tapio^1,2 ; Okser, Sebastian^1,2; Airola, Antti^1,2

• Source: Algorithms for Molecular Biology. 2012, Vol. 7 Issue 1, p1-15. 15p.

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A Partial Least Squares based algorithm for parsimonious variable selection.

• Source: Algorithms for Molecular Biology. 2011, Vol. 6 Issue 1, p27-38. 12p. 2 Diagrams, 1 Chart, 4 Graphs.

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Finding all maximal perfect haplotype blocks in linear time

• Authors : Alanko, Jarno; Bannai, Hideo; Cazaux, Bastien ...

Subjects: 0303 health sciences; Computer and information sciences; QH301-705.5

• Source: Algorithms Mol BiolAlgorithms for Molecular Biology, Vol 15, Iss 1, Pp 1-7 (2020)Algorithms for

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Prediction of plant promoters based on hexamers and random triplet pair analysis.

• Source: Algorithms for Molecular Biology. 2011, Vol. 6 Issue 1, p19-28. 10p.

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A weighted average difference method for detecting differentially expressed genes from microarray data.

• Authors : Kadota, Koji¹ ; KNakai, Yuji¹ ; KShimizu, Kentaro¹

• Source: Algorithms for Molecular Biology. 2008, Vol. 3, Special section p1-12. 12p. 7 Charts, 1 Graph.

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Breaking the hierarchy - a new cluster selection mechanism for hierarchical clustering methods

• Authors : Zahoránszky, LA; Katona, GY; Hári, P

Subjects: 0301 basic medicine; 03 medical and health sciences; Computational Theory and Mathematics

• Source: Algorithms Mol BiolAlgorithms for Molecular Biology, Vol 4, Iss 1, p 12 (2009)

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Perplexity: evaluating transcript abundance estimation in the absence of ground truth

• Authors : Jason Fan; Skylar Chan; Rob Patro

Subjects: RNA-seq; Transcript abundance estimation; Model selection

• Source: Algorithms for Molecular Biology, Vol 17, Iss 1, Pp 1-23 (2022)

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Fast computation of genome-metagenome interaction effects

• Authors : Florent Guinot; Marie Szafranski; Julien Chiquet

Subjects: Statistical machine learning; Variable selection; Dimensionality reduction

• Source: Algorithms for Molecular Biology, Vol 15, Iss 1, Pp 1-21 (2020)

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Sampling solution traces for the problem of sorting permutations by signed reversals.

• Authors : Baudet, Christian^1,2 ; Dias, Zanoni³; Sagot, Marie-France^1,2

• Source: Algorithms for Molecular Biology. 2012, Vol. 7 Issue 1, p18-34. 17p. 2 Diagrams, 8 Graphs.

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