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An algebraic metric for phylogenetic trees

• Authors : Ricardo Alberich; Gabriel Cardona; Gabriel Valiente ...

Subjects: Comparison of phylogenetic trees; permutations; linear time algorithms

• Source: http://bioinfo.uib.es/media/uploaded/transdist.pdf.

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Building large phylogenetic trees on coarse-grained parallel machines

• Authors : Thomas M. Keane; Andrew J. Page; Thomas J. Naughton ...

Subjects: Key Words. Distributed computing; Bioinformatics; Phylogenetic trees

• Source: http://www.cs.nuim.ie/~tnaughton/pubs/varasto/KPNTM2006p.pdf.

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Efficient algorithms for descendent subtrees comparison of phylogenetic trees with applications to co-evolutionary classifications in bacterial genome

• Authors : Yaw-ling Lin; Tsan-sheng Hsu; The Pennsylvania State University CiteSeerX Archives

Subjects: algorithm; phylogenetic trees; subtrees comparison

• Source: http://www.cs.pu.edu.tw/~yawlin/docs/2003-1216-ISAAC-LNCS2906-pp339-351-SCPT.pdf.

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The use (and misuse) of phylogenetic trees in comparative behavioral analyses

• Authors : Luca Pozzi; Christina M Bergey; Andrew S Burrell ...

• Source: http://www.lucapozzi.me/uploads/6/7/2/4/6724991/pozzi_bergey_burrell_2013_-_the_use_and_misuse_of_phylogenetic_trees_in_comparative_behavioral_analyses.pdf.

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DendroBLAST: Approximate Phylogenetic Trees in the Absence of Multiple Sequence Alignments

• Authors : S Kelly; P K Maini; The Pennsylvania State University CiteSeerX Archives

• Source: http://people.maths.ox.ac.uk/maini/PKM%20publications/355.pdf.

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Type Package Title Simulating Phylogenetic Trees under a General Model Version 1.1 Date 2013-01-01

• Authors : Oskar Hagen; Tanja Stadler; Maintainer Oskar Hagen ...

Subjects: License GPL-2

• Source: http://cran.at.r-project.org/web/packages/TreeSimGM/TreeSimGM.pdf.

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Basics for the Construction of Phylogenetic Trees Basics for the Construction of Phylogenetic Trees

• Authors : The Pennsylvania State University CiteSeerX Archives

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Basics for the Construction of Phylogenetic Trees Basics For The Construction Of Phylogenetic Trees

• Authors : The Pennsylvania State University CiteSeerX Archives

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On the distribution of the distances between pairs of leaves in phylogenetic trees

• Authors : Arnau Mir; The Pennsylvania State University CiteSeerX Archives

• Source: http://www.thinkmind.org/download.php?articleid%3Dbiotechno_2011_6_10_50148.

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TopiaryExplorer: Visualizing large phylogenetic trees with environmental metadata. Bioinformatics. doi:10.1093/bioinformatics/btr517

• Authors : Meg Pirrung; Ryan Kennedy; J. Gregory Caporaso ...

• Source: http://www.seas.upenn.edu/~kenry/topiary-explorer.pdf.

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