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Academic Journal

Infrared: a declarative tree decomposition-powered framework for bioinformatics

Subjects: Bioinformatics Fixed-parameter tractable algorithms Tree decomposition Boltzmann sampling Network phylogeny RNA sequence design RNA alignment Pseudoknots; Bioinformatics; Fixed-parameter tractable algorithms

  • Source: ISSN: 1748-7188 ; Algorithms for Molecular Biology ; https://inria.hal.science/hal-04211173 ; Algorithms for Molecular Biology, 2024,

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Academic Journal

Embedding phylogenetic trees in networks of low treewidth

Subjects: fixed-parameter tractability; treewidth; phylogenetic tree

  • Source: ISSN: 1462-7264.

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Academic Journal

Automated design of dynamic programming schemes for RNA folding with pseudoknots

Subjects: Pseudoknots; RNA folding; Tree Decomposition

  • Source: ISSN: 1748-7188 ; Algorithms for Molecular Biology ; https://hal.science/hal-04103565 ; Algorithms for Molecular Biology, In press.

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Conference

Reordering a tree according to an order on its leaves

Subjects: inversions; order; clusteringPrague; Czech Republic

  • Source: Proceedings of the 33rd Annual Symposium on Combinatorial Pattern Matching ; CPM 2022 ; https://hal.science/hal-03413413 ; CPM 2022, Jun 2022, Prague, Czech Republic.

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Conference

Automated design of dynamic programming schemes for RNA folding with pseudoknots

Subjects: Computational biology; Treewidth; Dynamic programming DPPotsdam; Germany

  • Source: WABI 2022 - 22nd Workshop on Algorithms in Bioinformatics ; https://inria.hal.science/hal-03676377 ; WABI 2022 - 22nd Workshop on

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Efficient reconciliation of genomic datasets of high similarity

Subjects: k-mers; counts; compressionPotsdam; Germany

  • Source: 22nd International Workshop on Algorithms in Bioinformatics22nd International Workshop on Algorithms in Bioinformatics (WABI

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Conference

Quantifying Hierarchical Conflicts in Homology Statements

Subjects: Homology; Syntenic block; T-Star PackingLa Jolla; CA; United States

  • Source: Comparative Genomics 19th International Conference, RECOMB-CG 2022, La Jolla, CA, USA, May 20–21, 2022, Proceedings ; RECOMB-CG 2022 - 19th International Conference on Comparative Genomics ;

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Report

On Turning A Graph Into A Phylogenetic Network

Subjects: Phylogenetic networks; graph orientations; NP-hardness

  • Source: https://hal.science/hal-04085424 ; 2023.

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Efficient and Robust Search of Microbial Genomes via Phylogenetic Compression

Subjects: [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM]

  • Source: https://hal.science/hal-04287842 ; 2023.

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Independent set reconfiguration: general and RNA-focused parameterized algorithms

Subjects: [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM]

  • Source: https://hal.science/hal-04094405 ; 2023.

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  • 1-10 of  156 results for ""[INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM]""