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Academic Journal

Computing the probability of gene trees concordant with the species tree in the multispecies coalescent

Authors : Truszkowski, Jakub; Scornavacca, Celine; Pardi, Fabio ...

Subjects: multispecies coalescent; gene tree; species tree

Source: ISSN: 0040-5809.

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Academic Journal

Phylogenetic diversity only weakly mitigates climate‐change‐driven biodiversity loss in insect communities

Authors : Li, Zongxu; Linard, Benjamin; Vogler, Alfried, P. ...

Subjects: barcodes; beetles; coleoptera

Source: ISSN: 0962-1083.

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Dissertation/ Thesis

Supertree methods for phylogenomics ; Méthodes de superarbres pour la phylogénomique

Authors : Scornavacca, Celine;

Subjects: Phylogenetics; Phylogenomics; Supertree

Source: https://theses.hal.science/tel-00842893 ; Bioinformatics [q-bio.QM]. Université Montpellier II - Sciences et Techniques du Languedoc,

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Academic Journal

Reconciliation and local gene tree rearrangement can be of mutual profit

Authors : Nguyen, Thi; Ranwez, Vincent; Pointet, Stéphanie ...

Subjects: Reconciliation; Evolution; Method

Source: ISSN: 1748-7188 ; Algorithms for Molecular Biology ; https://hal-lirmm.ccsd.cnrs.fr/lirmm-00812726 ; Algorithms for Molecular Biology, 2013, 8 (12), ⟨10.1186/1748-7188-8-12⟩ ;

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Conference

Accounting for gene tree uncertainty improves gene tree accuracy as well as duplications, transfers and losses predictions

Authors : Nguyen, Thi-Hau; Doyon, Jean-Philippe; Pointet, Stéphanie ...

Subjects: [SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM]; [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM]; [SDV.BV]Life Sciences [q-bio]/Vegetal BiologyLjubljana; Slovenia

Source: ISSN: 0302-9743 ; Lecture Notes in Computer Science ; 12th International Workshop on Algorithms in Bioinformatics (WABI 2012) ; https://hal.science/hal-00718347 ; 12th International Workshop on

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Academic Journal

Three new genome assemblies support a rapid radiation in Musa acuminata (wild banana)

Authors : Droc, Gaëtan; Sardos, Julie; Cenci, Alberto ...

Subjects: Phylogenomics; Genome assembly; Incomplete lineage sorting

Source: ISSN: 1759-6653.

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Academic Journal

Ancestral gene synteny reconstruction improves extant species scaffolding

Authors : Anselmetti, Yoann; Berry, Vincent; Chauve, Cedric ...

Subjects: gene tree/species tree reconciliation; parsimony; gene duplication/loss

Source: ISSN: 1471-2164 ; BMC Genomics ; https://hal.science/hal-01180303 ; BMC Genomics, 2015, 16 (Suppl 10), pp.S11. ⟨10.1186/1471-2164-16-S10-S11⟩.

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Academic Journal

RecPhyloXML: a format for reconciled gene trees

Authors : Duchemin, Wandrille; Gence, Guillaume; Arigon Chifolleau, Anne-Muriel ...

Subjects: [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM]

Source: ISSN: 1367-4803.

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Report

An Efficient Method for Exploring the Space of Gene Tree/Species Tree Reconciliations in a Probabilistic Framework

Authors : Doyon, Jean-Philippe; Hamel, Sylvie; Chauve, Cedric ...

Subjects: Comparative genomics; species tree; gene tree

Source: https://hal-lirmm.ccsd.cnrs.fr/lirmm-00448486 ; RR-10002, 2010, pp.19.

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Academic Journal

Resolution and reconciliation of non-binary gene trees with transfers, duplications and losses

Authors : Jacox, Edwin; Weller, Mathias; Tannier, Eric ...

Subjects: [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM]

Source: ISSN: 1367-4803.

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