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Dissertation/ Thesis

Identifying Novel Sources of Non-canonical Tumor Antigens via the Hybrid de novo Transcriptome Assembly Pipeline

Subjects: non canonical; novel isoforms; shared neoantigens

  • Source: Techachakrit, Jirapat. 2022. Identifying Novel Sources of Non-canonical Tumor Antigens via the Hybrid de novo Transcriptome Assembly Pipeline. Master's thesis, Harvard

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Dissertation/ Thesis

Multiplexed reading and writing of the transcriptome

Subjects: BOLORAMIS; In situ sequencing; Microglia

  • Source: Liu, Songlei. 2022. Multiplexed reading and writing of the transcriptome. Doctoral dissertation, Harvard University Graduate School of Arts and Sciences.

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Dissertation/ Thesis

Advancing precision genome and transcriptome engineering

Subjects: Bioengineering

  • Source: Chen, Peter Jeffrey. 2022. Advancing precision genome and transcriptome engineering. Doctoral dissertation, Harvard University Graduate School of Arts and Sciences.

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Dissertation/ Thesis

Unknotting Neurons: Automating the Segmentation of Mouse Hippocampal Culture Imagery using Spatial Transcriptome Profiling

Subjects: MERFISH; Neurons; Segmentation

  • Source: Oatman, Harrison. 2022. Unknotting Neurons: Automating the Segmentation of Mouse Hippocampal Culture Imagery using Spatial Transcriptome Profiling. Bachelor's thesis,

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Dissertation/ Thesis

Transcriptome Analysis of Neuronal and Muscle Tissue in Smn Mutant Drosophila melanogaster

Subjects: Bioinformatics

  • Source: Heggeness, Hansine. 2021. Transcriptome Analysis of Neuronal and Muscle Tissue in Smn Mutant Drosophila melanogaster. Master's thesis, Harvard University Division of

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Academic Journal

Smart-RRBS for single-cell methylome and transcriptome analysis

Subjects: General Biochemistry; Genetics and Molecular Biology

  • Source: Gu, Hongcang, Ayush T. Raman, Xiaoxue Wang, Federico Gaiti, Ronan Chaligne, Arman W. Mohammad, Aleksandra Arczewska et al. "Smart-RRBS for single-cell methylome and

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Dissertation/ Thesis

Transcriptome Analysis of Wnt Signaling Pathway in Pediatric Hepatocellular Carcinoma

Subjects: hepatocellular carcinoma; next-generation sequencing; transcriptome

  • Source: Rabbani, Naveed. 2018. Transcriptome Analysis of Wnt Signaling Pathway in Pediatric Hepatocellular Carcinoma. Doctoral dissertation, Harvard Medical School.

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Dissertation/ Thesis

Deciphering Transcriptome: Transcription Factors as Master Mind Behind Gene Expression

Subjects: Transcription Factors; TF3C; TF Co-localization

  • Source: Cai, Wenting. 2019. Deciphering Transcriptome: Transcription Factors as Master Mind Behind Gene Expression. Doctoral dissertation, Harvard University, Graduate School of

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Dissertation/ Thesis

Integrating Transcriptome Sequencing From Mendelian Disease Patients and Healthy Controls to Improve Genetic Variant Interpretation

Subjects: genomics; transcriptomics; RNA-seq

  • Source: Cummings, Besse Bery. 2019. Integrating Transcriptome Sequencing From Mendelian Disease Patients and Healthy Controls to Improve Genetic Variant Interpretation. Doctoral

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Academic Journal

Transcriptome-Wide Off-Target RNA Editing Induced by CRISPR-Guided DNA Base Editors

Subjects: Multidisciplinary

  • Source: Grünewald, Julian, Ronghao Zhou, Sara Garcia, Sowmya Iyer, Caleb Lareau, Martin Aryee, Keith Joung. "Transcriptome-Wide Off-Target RNA Editing Induced by CRISPR-Guided

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