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Benchmarking of methods to analyse data derived from GBS-MeDIP

• Authors : de Anca Prado, Violeta, 1996-, Author; Pèrtille, Fábio, Author; Sá, Pedro, Author ...

• Source: BMC Bioinformatics. 27(1)

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Dyport: dynamic importance-based biomedical hypothesis generation benchmarking technique.

• Authors : Tyagin, Ilya¹ (AUTHOR) ; Safro, Ilya² (AUTHOR)

• Source: BMC Bioinformatics. 6/13/2024, Vol. 25 Issue 1, p1-28. 28p.

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Benchmarking robustness of deep neural networks in semantic segmentation of fluorescence microscopy images.

• Authors : Zhong L; School of Artificial Intelligence, University of Chinese Academy of Sciences, Beijing, 100049, China.; State Key Laboratory of Multimodal Artificial Intelligence Systems, Institute of Automation, Chinese Academy of Science, Beijing, 100190, China.

Subjects: Microscopy, Fluorescence*/Microscopy, Fluorescence*/Microscopy, Fluorescence*/methods ; Benchmarking*/Benchmarking*/Benchmarking*/methods ; Image Processing, Computer-Assisted*/Image Processing, Computer-Assisted*/Image Processing, Computer-Assisted*/methods

• Source: BMC bioinformatics [BMC Bioinformatics] 2024 Aug 20; Vol. 25 (1), pp. 269. Date of Electronic Publication: 2024 Aug Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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Benchmarking cell type annotation methods for 10x Xenium spatial transcriptomics data

• Authors : Jinming Cheng; Xinyi Jin; Gordon K. Smyth

Subjects: Single-cell; QH301-705.5; Sequence Analysis, RNA

• Source: BMC BioinformaticsBMC Bioinformatics, Vol 26, Iss 1, Pp 1-15 (2025)

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Integrated approach to generate artificial samples with low tumor fraction for somatic variant calling benchmarking.

• Authors : Sergi A; Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, Via Ponzio 34/5, 20133, Milan, Italy. .; IRCCS Humanitas Research Hospital, Via Manzoni 56, 20089, Milan, Rozzano, Italy. .

Subjects: High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/methods ; Neoplasms*/Neoplasms*/Neoplasms*/genetics ; Benchmarking*

• Source: BMC bioinformatics [BMC Bioinformatics] 2024 May 08; Vol. 25 (1), pp. 180. Date of Electronic Publication: 2024 May Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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Benchmarking workflows to assess performance and suitability of germline variant calling pipelines in clinical diagnostic assays.

• Authors : Krishnan, Vandhana^1,2 (AUTHOR); Utiramerur, Sowmithri^2,3,4 (AUTHOR) ; Ng, Zena³ (AUTHOR)

• Source: BMC Bioinformatics. 2/24/2021, Vol. 22 Issue 1, p1-17. 17p.

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Systematic and benchmarking studies of pipelines for mammal WGBS data in the novel NGS platform.

• Authors : Lin QT; GeneMind Biosciences Company Limited, Shenzhen, China.; Yang W

Subjects: Benchmarking* ; High-Throughput Nucleotide Sequencing*; Mammals/Mammals/Mammals/genetics

• Source: BMC bioinformatics [BMC Bioinformatics] 2023 Jan 31; Vol. 24 (1), pp. 33. Date of Electronic Publication: 2023 Jan 31.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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Comprior: facilitating the implementation and automated benchmarking of prior knowledge-based feature selection approaches on gene expression data sets.

• Authors : Perscheid, Cindy¹ (AUTHOR)

• Source: BMC Bioinformatics. 8/12/2021, Vol. 22 Issue 1, p1-15. 15p.

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Benchmarking causal reasoning algorithms for gene expression-based compound mechanism of action analysis

• Authors : Layla Hosseini-Gerami; Ixavier Alonzo Higgins; David A. Collier

Subjects: Transcriptomics; Causal reasoning; Mechanism of action

• Source: BMC Bioinformatics, Vol 24, Iss 1, Pp 1-28 (2023)

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Benchmarking the PEPOP methods for mimicking discontinuous epitopes.

• Authors : Demolombe, Vincent¹ (AUTHOR); de Brevern, Alexandre G.^2,3,4,5 (AUTHOR); Molina, Franck⁶ (AUTHOR)

• Source: BMC Bioinformatics. 12/30/2019 Supplement 22, Vol. 20 Issue 1, p1-17. 17p. 2 Diagrams, 3 Charts, 5 Graphs.

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