Search Results

DeepMoIC: multi-omics data integration via deep graph convolutional networks for cancer subtype classification.

• Authors : Wu, Jiecheng¹ (AUTHOR); Chen, Zhaoliang² (AUTHOR); Xiao, Shunxin³ (AUTHOR)

• Source: BMC Genomics. 12/18/2024, Vol. 25 Issue 1, p1-13. 13p.

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Alignment-free viral sequence classification at scale.

• Authors : van Zyl DJ; INFORM Africa research study group

Subjects: SARS-CoV-2*/SARS-CoV-2*/SARS-CoV-2*/genetics ; SARS-CoV-2*/SARS-CoV-2*/SARS-CoV-2*/classification ; Genome, Viral*

• Source: BMC genomics [BMC Genomics] 2025 Apr 18; Vol. 26 (1), pp. 389. Date of Electronic Publication: 2025 Apr 18.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164

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An algorithm for annotation and classification of T. cruzi MASP sequences: towards a better understanding of the parasite genetic variability.

• Authors : Dean AAC; Instituto de Investigaciones Biotecnológicas (IIBio), Universidad Nacional de San Martín (UNSAM), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Av. 25 de Mayo y Francia, Campus UNSAM, B1650HMP San Martín, Buenos Aires, Argentina.; Escuela de Bio y Nanotecnologías (EByN), UNSAM, Buenos Aires, Argentina.

Subjects: Trypanosoma cruzi*/Trypanosoma cruzi*/Trypanosoma cruzi*/genetics ; Trypanosoma cruzi*/Trypanosoma cruzi*/Trypanosoma cruzi*/classification ; Algorithms*

• Source: BMC genomics [BMC Genomics] 2025 Feb 24; Vol. 26 (1), pp. 194. Date of Electronic Publication: 2025 Feb 24.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164

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Machine learning classification of archaea and bacteria identifies novel predictive genomic features.

• Authors : Bobbo T; Institute for Biomedical Technologies, National Research Council (CNR), Via Fratelli Cervi 93, Segrate (MI), 20054, Italy.; Biscarini F

Subjects: Archaea*/Archaea*/Archaea*/genetics ; Archaea*/Archaea*/Archaea*/classification ; Machine Learning*

• Source: BMC genomics [BMC Genomics] 2024 Oct 14; Vol. 25 (1), pp. 955. Date of Electronic Publication: 2024 Oct 14.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164

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adhesiomeR: a tool for Escherichia coli adhesin classification and analysis.

• Authors : Sidorczuk K; Quadram Institute Bioscience, Norwich Research Park, Norwich, UK.; Earlham Institute, Norwich Research Park, Norwich, UK.

Subjects: Adhesins, Escherichia coli*/Adhesins, Escherichia coli*/Adhesins, Escherichia coli*/genetics ; Adhesins, Escherichia coli*/Adhesins, Escherichia coli*/Adhesins, Escherichia coli*/metabolism ; Escherichia coli*/Escherichia coli*/Escherichia coli*/genetics

• Source: BMC genomics [BMC Genomics] 2024 Jun 17; Vol. 25 (1), pp. 609. Date of Electronic Publication: 2024 Jun 17.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164

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Genome-based taxonomic classification of the genus Sulfitobacter along with the proposal of a new genus Parasulfitobacter gen. nov. and exploring the gene clusters associated with sulfur oxidation.

• Authors : Xu X; Department of Pathogenic Biology, College of Basic Medicine, Jining Medical University, 272067, Jining, Shandong, P. R. China.; He M

Subjects: Sulfur*/Sulfur*/Sulfur*/metabolism ; Multigene Family* ; Oxidation-Reduction*

• Source: BMC genomics [BMC Genomics] 2024 Apr 22; Vol. 25 (1), pp. 389. Date of Electronic Publication: 2024 Apr 22.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164

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Secure tumor classification by shallow neural network using homomorphic encryption.

• Authors : Hong, Seungwan¹ (AUTHOR) ; Park, Jai Hyun¹ (AUTHOR); Cho, Wonhee¹ (AUTHOR)

• Source: BMC Genomics. 4/8/2022, Vol. 23 Issue 1, p1-19. 19p.

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Distribution rules of 8-mer spectra and characterization of evolution state in animal genome sequences.

• Authors : Li, Xiaolong¹ (AUTHOR); Li, Hong¹ (AUTHOR) ; Yang, Zhenhua² (AUTHOR)

• Source: BMC Genomics. 9/12/2024, Vol. 25 Issue 1, p1-14. 14p.

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The advantages of the Matthews correlation coefficient (MCC) over F1 score and accuracy in binary classification evaluation.

• Authors : Chicco, Davide^1,2 (AUTHOR) ; Jurman, Giuseppe³ (AUTHOR)

• Source: BMC Genomics. 1/2/2020, Vol. 21 Issue 1, p1-13. 13p. 5 Charts, 2 Graphs.

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Chromosome-level genome assembly and anticoagulant protein annotation of the buffalo leech Hirudinaria bpling (Hirudinea: Hirudinidae).

• Authors : Khan MS; College of Medicine, Xi'an International University, Xi'an, 71007, China. .; Müller C

Subjects: Leeches*/Leeches*/Leeches*/genetics ; Leeches*/Leeches*/Leeches*/classification ; Genome*

• Source: BMC genomics [BMC Genomics] 2025 Jun 03; Vol. 26 (1), pp. 558. Date of Electronic Publication: 2025 Jun 03.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164

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