Search Results

PlasmidHunter: accurate and fast prediction of plasmid sequences using gene content profile and machine learning.

• Authors : Tian, Renmao; Zhou, Jizhong; Imanian, Behzad

Subjects: artificial intelligence (AI); genomic sequencing; machine learning (ML)

• Source: Briefings in Bioinformatics. 25(4)

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ifDEEPre: large protein language-based deep learning enables interpretable and fast predictions of enzyme commission numbers.

• Authors : Tan, Qingxiong¹ (AUTHOR); Xiao, Jin² (AUTHOR); Chen, Jiayang¹ (AUTHOR)

• Source: Briefings in Bioinformatics. Jul2024, Vol. 25 Issue 4, p1-21. 21p.

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ReadCurrent: a VDCNN-based tool for fast and accurate nanopore selective sequencing

• Authors : Kechen Fan; Mengfan Li; Jiarong Zhang

Subjects: Nanopore Sequencing; Nanopores; Deep Learning

• Source: Brief Bioinform

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FastBiCmrMLM: a fast and powerful compressed variance component mixed logistic model for big genomic case-control genome-wide association study.

• Authors : Wang, Jing-Tian (AUTHOR); Chang, Xiao-Yu (AUTHOR); Zhao, Qiong (AUTHOR)

• Source: Briefings in Bioinformatics. Jul2024, Vol. 25 Issue 4, p1-14. 14p.

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Kled: an ultra-fast and sensitive structural variant detection tool for long-read sequencing data.

• Authors : Zhang, Zhendong^1,2 (AUTHOR); Jiang, Tao^1,2,3 (AUTHOR); Li, Gaoyang^1,2 (AUTHOR)

• Source: Briefings in Bioinformatics. Mar2024, Vol. 25 Issue 2, p1-10. 10p.

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Qmatey: an automated pipeline for fast exact matching-based alignment and strain-level taxonomic binning and profiling of metagenomes.

• Authors : Adams, Alison K^1,2 (AUTHOR); Kristy, Brandon D^3,4 (AUTHOR); Gorman, Myranda^5,6 (AUTHOR)

• Source: Briefings in Bioinformatics. Nov2023, Vol. 24 Issue 6, p1-11. 11p.

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WMSA 2: a multiple DNA/RNA sequence alignment tool implemented with accurate progressive mode and a fast win-win mode combining the center star and progressive strategies.

• Authors : Chen, Juntao¹ (AUTHOR); Chao, Jiannan² (AUTHOR); Liu, Huan³ (AUTHOR)

• Source: Briefings in Bioinformatics. Jul2023, Vol. 24 Issue 4, p1-9. 9p.

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Fast and accurate protein intrinsic disorder prediction by using a pretrained language model.

• Authors : Song, Yidong¹ (AUTHOR); Yuan, Qianmu¹ (AUTHOR); Chen, Sheng¹ (AUTHOR)

• Source: Briefings in Bioinformatics. Jul2023, Vol. 24 Issue 4, p1-10. 10p.

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A fast and accurate method for SARS-CoV-2 genomic tracing.

• Authors : Ma, Wentai^1,2 (AUTHOR); Shi, Leisheng^1,2 (AUTHOR); Li, Mingkun^1,2 (AUTHOR)

• Source: Briefings in Bioinformatics. Nov2023, Vol. 24 Issue 6, p1-10. 10p.

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Fast and accurate protein function prediction from sequence through pretrained language model and homology-based label diffusion.

• Authors : Yuan, Qianmu¹ (AUTHOR); Xie, Junjie¹ (AUTHOR); Xie, Jiancong¹ (AUTHOR)

• Source: Briefings in Bioinformatics. May2023, Vol. 24 Issue 3, p1-11. 11p.

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