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Advantages of mixing bioinformatics and visualization approaches for analyzing sRNA-mediated regulatory bacterial networks

• Authors : Thebault, Patricia; Bourqui, Romain; William, Benchimol ...

Subjects: visualization software; 0301 basic medicine; RNA, Bacterial

• Source: Brief BioinformBriefings in BioinformaticsBriefings in Bioinformatics, Oxford University Press (OUP), 2015, 16 (5), pp.1-11.

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Computational tools for plant small RNA detection and categorization

• Authors : Lionel Morgado; Frank Johannes

Subjects: Paper; 0301 basic medicine; sRNA function prediction

• Source: Brief Bioinform

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Advantages of mixing bioinformatics and visualization approaches for analyzing sRNA-mediated regulatory bacterial networks.

• Authors : Thébault, Patricia; Bourqui, Romain; Benchimol, William

Subjects: BIOINFORMATICS; NON-coding RNA; RNA sequencing

• Source: Briefings in Bioinformatics; Sep2015, Vol. 16 Issue 5, p795-805, 11p

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vsRNAfinder: a novel method for identifying high-confidence viral small RNAs from small RNA-Seq data.

• Authors : Cai, Zena¹ (AUTHOR); Fu, Ping¹ (AUTHOR); Qiu, Ye¹ (AUTHOR)

• Source: Briefings in Bioinformatics. Nov2022, Vol. 23 Issue 6, p1-7. 7p.

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A survey of software tools for microRNA discovery and characterization using RNA-seq.

• Authors : Bortolomeazzi, Michele¹ (AUTHOR); Gaffo, Enrico¹ (AUTHOR) ; Bortoluzzi, Stefania¹ (AUTHOR)

• Source: Briefings in Bioinformatics. May2019, Vol. 20 Issue 3, p918-930. 13p.

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MicroRNA annotation in plants: current status and challenges.

• Authors : Zhao, Yongxin¹ (AUTHOR); Kuang, Zheng² (AUTHOR); Wang, Ying³ (AUTHOR)

• Source: Briefings in Bioinformatics. Sep2021, Vol. 22 Issue 5, p1-15. 15p.

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Small noncoding RNA discovery and profiling with sRNAtools based on high-throughput sequencing.

• Authors : Liu, Qi¹ (AUTHOR); Ding, Changjun¹ (AUTHOR); Lang, Xiaoqiang² (AUTHOR)

• Source: Briefings in Bioinformatics. Jan2021, Vol. 22 Issue 1, p463-473. 11p.

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A benchmarking of pipelines for detecting ncRNAs from RNA-Seq data.

• Authors : Bella, Sebastiano Di¹ (AUTHOR); Ferlita, Alessandro La^2,3 (AUTHOR); Carapezza, Giovanni¹ (AUTHOR)

• Source: Briefings in Bioinformatics. Nov2020, Vol. 21 Issue 6, p1987-1998. 12p.

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sRNAfrag: a pipeline and suite of tools to analyze fragmentation in small RNA sequencing data.

• Authors : Nakatsu, Ken^1,2 (AUTHOR); Jijiwa, Mayumi² (AUTHOR); Khadka, Vedbar² (AUTHOR)

• Source: Briefings in Bioinformatics. Jan2024, Vol. 25 Issue 1, p1-15. 15p.

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Computational tools for plant small RNA detection and categorization.

• Authors : Morgado, Lionel; Johannes, Frank

Subjects: PLANT RNA; NON-coding RNA; PLANT development

• Source: Briefings in Bioinformatics; Jul2019, p1181-1192, 12p

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