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Genome-wide quantitative dissection of an arthropod segmented body plan at single-cell resolution.

• Authors : Akaiwa, Takanori^1,2,3 (AUTHOR); Oda, Hiroki^1,2 (AUTHOR); Akiyama-Oda, Yasuko^1,4,5 (AUTHOR)

• Source: Communications Biology. 6/11/2025, Vol. 8 Issue 1, p1-18. 18p.

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Integrative analysis of 115 transcriptomic studies decodes the molecular landscape of neurodevelopmental disorders.

• Authors : Koetsier J; Department of Biochemistry, Cardiovascular Research Institute Maastricht (CARIM), Maastricht University, Maastricht, The Netherlands. .; GKC, Maastricht University Medical Centre, Maastricht, The Netherlands. .

Subjects: Neurodevelopmental Disorders*/Neurodevelopmental Disorders*/Neurodevelopmental Disorders*/genetics ; Neurodevelopmental Disorders*/Neurodevelopmental Disorders*/Neurodevelopmental Disorders*/metabolism ; Transcriptome*

• Source: Communications biology [Commun Biol] 2025 Jun 12; Vol. 8 (1), pp. 914. Date of Electronic Publication: 2025 Jun 12.Publisher: Nature Publishing Group UK Country of Publication: England NLM ID: 101719179 Publication Model: Electronic Cited Medium: Internet ISSN:

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A composite scaling network of EfficientNet for improving spatial domain identification performance.

• Authors : Zhao, Yanan^1,2 (AUTHOR); Long, Chunshen² (AUTHOR); Shang, Wenjing¹ (AUTHOR)

• Source: Communications Biology. 11/25/2024, Vol. 7 Issue 1, p1-14. 14p.

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Spatially informed graph transformers for spatially resolved transcriptomics.

• Authors : Bao X; Key Laboratory of Systems Health Science of Zhejiang Province, School of Life Science, Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences, Hangzhou, China.; Bai X

Subjects: Gene Expression Profiling*/Gene Expression Profiling*/Gene Expression Profiling*/methods ; Transcriptome*; Humans

• Source: Communications biology [Commun Biol] 2025 Apr 06; Vol. 8 (1), pp. 574. Date of Electronic Publication: 2025 Apr 06.Publisher: Nature Publishing Group UK Country of Publication: England NLM ID: 101719179 Publication Model: Electronic Cited Medium: Internet ISSN:

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Flexible integration of spatial and expression information for precise spot embedding via ZINB-based graph-enhanced autoencoder.

• Authors : Leng J; Zhejiang Lab, Hangzhou, Zhejiang, 311121, China.; Yu J

Subjects: Gene Expression Profiling*/Gene Expression Profiling*/Gene Expression Profiling*/methods ; Transcriptome* ; Computational Biology*/Computational Biology*/Computational Biology*/methods

• Source: Communications biology [Commun Biol] 2025 Apr 04; Vol. 8 (1), pp. 556. Date of Electronic Publication: 2025 Apr 04.Publisher: Nature Publishing Group UK Country of Publication: England NLM ID: 101719179 Publication Model: Electronic Cited Medium: Internet ISSN:

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Spatial transcriptomic profiling of the human fallopian tube epithelium reveals region-specific gene expression patterns.

• Authors : Sipes J; Department of Pathology and Laboratory Medicine, University of Kansas Medical Center, Kansas City, KS, 66160, USA.; Bioengineering Program, The University of Kansas, Lawrence, KS, 64111, USA.

Subjects: Fallopian Tubes*/Fallopian Tubes*/Fallopian Tubes*/metabolism ; Transcriptome* ; Gene Expression Profiling*

• Source: Communications biology [Commun Biol] 2025 Mar 29; Vol. 8 (1), pp. 520. Date of Electronic Publication: 2025 Mar 29.Publisher: Nature Publishing Group UK Country of Publication: England NLM ID: 101719179 Publication Model: Electronic Cited Medium: Internet ISSN:

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scMalignantFinder distinguishes malignant cells in single-cell and spatial transcriptomics by leveraging cancer signatures.

• Authors : Yu Q; Shanghai-MOST Key Laboratory of Health and Disease Genomics, Shanghai Institute for Biomedical and Pharmaceutical Technologies, Shanghai, China.; Shanghai Genbase Biotechnology Co., Ltd, Shanghai, China.

Subjects: Single-Cell Analysis*/Single-Cell Analysis*/Single-Cell Analysis*/methods ; Neoplasms*/Neoplasms*/Neoplasms*/genetics ; Neoplasms*/Neoplasms*/Neoplasms*/pathology

• Source: Communications biology [Commun Biol] 2025 Mar 27; Vol. 8 (1), pp. 504. Date of Electronic Publication: 2025 Mar 27.Publisher: Nature Publishing Group UK Country of Publication: England NLM ID: 101719179 Publication Model: Electronic Cited Medium: Internet ISSN:

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Deconvolution and inference of spatial communication through optimization algorithm for spatial transcriptomics.

• Authors : Wang Z; Key Laboratory of Systems Health Science of Zhejiang Province, School of Life Science, Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences, Hangzhou, 310024, China.; Liu Y

Subjects: Algorithms* ; Transcriptome* ; Gene Expression Profiling*/Gene Expression Profiling*/Gene Expression Profiling*/methods

• Source: Communications biology [Commun Biol] 2025 Feb 14; Vol. 8 (1), pp. 235. Date of Electronic Publication: 2025 Feb 14.Publisher: Nature Publishing Group UK Country of Publication: England NLM ID: 101719179 Publication Model: Electronic Cited Medium: Internet ISSN:

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Single cell transcriptome profiling reveals pathogenesis of bullous pemphigoid.

• Authors : Liang G; Hospital for Skin Diseases, Institute of Dermatology, Chinese Academy of Medical Sciences and Peking Union Medical College, Nanjing, China.; Zhao C

Subjects: Pemphigoid, Bullous*/Pemphigoid, Bullous*/Pemphigoid, Bullous*/genetics ; Pemphigoid, Bullous*/Pemphigoid, Bullous*/Pemphigoid, Bullous*/pathology ; Pemphigoid, Bullous*/Pemphigoid, Bullous*/Pemphigoid, Bullous*/immunology

• Source: Communications biology [Commun Biol] 2025 Feb 08; Vol. 8 (1), pp. 203. Date of Electronic Publication: 2025 Feb 08.Publisher: Nature Publishing Group UK Country of Publication: England NLM ID: 101719179 Publication Model: Electronic Cited Medium: Internet ISSN:

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Single-cell RNA-seq data augmentation using generative Fourier transformer.

• Authors : Nouri, Nima¹ (AUTHOR)

• Source: Communications Biology. 1/22/2025, Vol. 8 Issue 1, p1-14. 14p.

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