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Academic Journal

Enhancers and genome conformation provide complex transcriptional control of a herpesviral gene.

  • Authors : Morgens DW; Department of Plant and Microbial Biology, UC Berkeley, Berkeley, CA, USA. .; Gulyas L

Subjects: Herpesvirus 8, Human*/Herpesvirus 8, Human*/Herpesvirus 8, Human*/genetics ; Gene Expression Regulation, Viral* ; Genome, Viral*

  • Source: Molecular systems biology [Mol Syst Biol] 2025 Jan; Vol. 21 (1), pp. 30-58. Date of Electronic Publication: 2024 Nov 19.Publisher: EMBO Press Country of Publication: Germany NLM ID: 101235389 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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Academic Journal

A ubiquitous GC content signature underlies multimodal mRNA regulation by DDX3X.

  • Authors : Jowhar Z; Department of Cell and Tissue Biology, UCSF, San Francisco, USA.; Medical Scientist Training Program, University of California, San Francisco, San Francisco, CA, 94158, USA.

Subjects: Gene Expression Regulation* ; RNA*; Animals

  • Source: Molecular systems biology [Mol Syst Biol] 2024 Mar; Vol. 20 (3), pp. 276-290. Date of Electronic Publication: 2024 Jan 25.Publisher: EMBO Press Country of Publication: Germany NLM ID: 101235389 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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Academic Journal

Transcription factor expression is the main determinant of variability in gene co-activity.

  • Authors : van Duin L; Section for Computational and RNA Biology, Department of Biology, University of Copenhagen, Copenhagen, Denmark.; Krautz R

Subjects: Transcription Factors*/Transcription Factors*/Transcription Factors*/genetics ; Gene Expression Regulation*; Humans

  • Source: Molecular systems biology [Mol Syst Biol] 2023 Jul 11; Vol. 19 (7), pp. e11392. Date of Electronic Publication: 2023 May 09.Publisher: EMBO Press Country of Publication: Germany NLM ID: 101235389 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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Academic Journal

A stimulus-contingent positive feedback loop enables IFN-β dose-dependent activation of pro-inflammatory genes.

  • Authors : Wilder CL; Department of Microbiology, Immunology, and Molecular Genetics, University of California, Los Angeles, CA, USA.; Lefaudeux D

Subjects: Gene Expression Regulation* ; Transcription Factors*; Feedback

  • Source: Molecular systems biology [Mol Syst Biol] 2023 May 09; Vol. 19 (5), pp. e11294. Date of Electronic Publication: 2023 Mar 17.Publisher: EMBO Press Country of Publication: Germany NLM ID: 101235389 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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Academic Journal

Systemic genome-epigenome analysis captures a lineage-specific super-enhancer for MYB in gastrointestinal adenocarcinoma.

  • Authors : Li F; State Key Laboratory of Genetics and Development of Complex Phenotype, School of Life Sciences, Human Phenome Institute, Fudan University, Shanghai, 200438, China.; Wang S

Subjects: Enhancer Elements, Genetic* ; Gastrointestinal Neoplasms*/Gastrointestinal Neoplasms*/Gastrointestinal Neoplasms*/genetics ; Gastrointestinal Neoplasms*/Gastrointestinal Neoplasms*/Gastrointestinal Neoplasms*/pathology

  • Source: Molecular systems biology [Mol Syst Biol] 2025 Jun; Vol. 21 (6), pp. 696-719. Date of Electronic Publication: 2025 Apr 15.Publisher: EMBO Press Country of Publication: Germany NLM ID: 101235389 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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Academic Journal

Dynamical and combinatorial coding by MAPK p38 and NFκB in the inflammatory response of macrophages.

Subjects: Combinatorial Signaling Dynamics; Cytokine Control; Inflammation

  • Source: Molecular Systems Biology. 20(8)

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Academic Journal

CellRegMap: a statistical framework for mapping context-specific regulatory variants using scRNA-seq.

  • Authors : Cuomo ASE; European Bioinformatics Institute (EMBL-EBI), Cambridge, UK.; Wellcome Sanger Institute, Cambridge, UK.

Subjects: Gene Expression Regulation* ; Single-Cell Analysis*/Single-Cell Analysis*/Single-Cell Analysis*/methods; Gene Expression Profiling/Gene Expression Profiling/Gene Expression Profiling/methods

  • Source: Molecular systems biology [Mol Syst Biol] 2022 Aug; Vol. 18 (8), pp. e10663.Publisher: EMBO Press Country of Publication: Germany NLM ID: 101235389 Publication Model: Print Cited Medium: Internet ISSN: 1744-4292

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Academic Journal

Abundant clock proteins point to missing molecular regulation in the plant circadian clock.

  • Authors : Urquiza-García U; Centre for Engineering Biology and School of Biological Sciences, C. H. Waddington Building, University of Edinburgh, King's Buildings, Edinburgh, EH9 3BF, UK.; Institute of Synthetic Biology, University of Düsseldorf, Düsseldorf, Germany.

Subjects: Arabidopsis*/Arabidopsis*/Arabidopsis*/genetics ; Arabidopsis*/Arabidopsis*/Arabidopsis*/physiology ; Arabidopsis*/Arabidopsis*/Arabidopsis*/metabolism

  • Source: Molecular systems biology [Mol Syst Biol] 2025 Apr; Vol. 21 (4), pp. 361-389. Date of Electronic Publication: 2025 Feb 20.Publisher: EMBO Press Country of Publication: Germany NLM ID: 101235389 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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Academic Journal

Circadian clock features define novel subtypes among breast cancer cells and shape drug sensitivity.

  • Authors : Ector C; Charité Comprehensive Cancer Center, Charité - Universitätsmedizin Berlin, 10117, Berlin, Germany.; Berlin School of Integrative Oncology, Charité - Universitätsmedizin Berlin, 10117, Berlin, Germany.

Subjects: Breast Neoplasms*/Breast Neoplasms*/Breast Neoplasms*/drug therapy ; Breast Neoplasms*/Breast Neoplasms*/Breast Neoplasms*/genetics ; Breast Neoplasms*/Breast Neoplasms*/Breast Neoplasms*/metabolism

  • Source: Molecular systems biology [Mol Syst Biol] 2025 Apr; Vol. 21 (4), pp. 315-340. Date of Electronic Publication: 2025 Feb 24.Publisher: EMBO Press Country of Publication: Germany NLM ID: 101235389 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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Academic Journal

Epigenetic modifications and metabolic gene mutations drive resistance evolution in response to stimulatory antibiotics.

  • Authors : Lin H; Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, 100085, Beijing, China.; University of Chinese Academy of Sciences, 100049, Beijing, China.

Subjects: Anti-Bacterial Agents*/Anti-Bacterial Agents*/Anti-Bacterial Agents*/pharmacology ; Epigenesis, Genetic*/Epigenesis, Genetic*/Epigenesis, Genetic*/drug effects ; Drug Resistance, Bacterial*/Drug Resistance, Bacterial*/Drug Resistance, Bacterial*/genetics

  • Source: Molecular systems biology [Mol Syst Biol] 2025 Mar; Vol. 21 (3), pp. 294-314. Date of Electronic Publication: 2025 Jan 16.Publisher: EMBO Press Country of Publication: Germany NLM ID: 101235389 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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  • 1-10 of  959 results for ""Gene Expression Regulation""