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Academic Journal

Interpreting CRISPR-Cas12a enzyme kinetics through free energy change of nucleic acids.

Authors : Zhang, Jiongyu^1,2 (AUTHOR); Guan, Xin^1,2 (AUTHOR); Moon, Jeong¹ (AUTHOR)

Subjects: *DNA denaturation; *Nucleic acids; *Single-stranded DNA

Source: Nucleic Acids Research. 12/11/2024, Issue 22, p14077-14092. 16p.

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Academic Journal

Plant Metabolic Network 16: expansion of underrepresented plant groups and experimentally supported enzyme data.

Authors : Hawkins, Charles^1,2 (AUTHOR); Xue, Bo^1,2 (AUTHOR); Yasmin, Farida³ (AUTHOR)

Subjects: *Plant metabolism; *Online databases; *Enzyme metabolism

Source: Nucleic Acids Research. 1/6/2025, Vol. 53 Issue D1, pD1606-D1613. 8p.

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Academic Journal

Systematic analysis of specificities and flanking sequence preferences of bacterial DNA-(cytosine C5)-methyltransferases reveals mechanisms of enzyme- and sequence-specific DNA readout.

Authors : Sogl, Greta¹ (AUTHOR); Pilling, Sabrina¹ (AUTHOR); Fischer, Lukas F J¹ (AUTHOR)

Subjects: *Deoxyribozymes; *DNA methylation; *DNA structure

Source: Nucleic Acids Research. 3/24/2025, Vol. 53 Issue 5, p1-23. 23p.

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Academic Journal

Identification of an enzyme with strong single-stranded DNA ligation activity and its application for sequencing.

Authors : Miura, Fumihito^1,2 (AUTHOR); Shibata, Yukiko¹ (AUTHOR); Miura, Miki² (AUTHOR)

Subjects: *Deoxyribozymes; *Single-stranded DNA; *Molecular biology

Source: Nucleic Acids Research. 2/10/2025, Vol. 53 Issue 3, p1-11. 11p.

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Academic Journal

Cryo-EM structures of DNA-free and DNA-bound BsaXI: architecture of a Type IIB restriction–modification enzyme Open Access.

Authors : Shen, Betty W¹ (AUTHOR); Heiter, Dan² (AUTHOR); Yang, Weiwei² (AUTHOR)

Subjects: *Deoxyribozymes; *Electron microscopy; *Cytokinesis

Source: Nucleic Acids Research. 4/24/2025, Vol. 53 Issue 7, p1-21. 21p.

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Academic Journal

Distinct structural and functional heterochromatin partitioning of lamin B1 and lamin B2 revealed using genome-wide nicking enzyme epitope targeted DNA sequencing.

Authors : Sen, Sagnik¹ (AUTHOR); Estève, Pierre-Olivier¹ (AUTHOR); Raman, Karthikeyan¹ (AUTHOR)

Subjects: *Gene expression; *Deoxyribozymes; *Heterochromatin

Source: Nucleic Acids Research. 1/27/2025, Vol. 53 Issue 2, p1-22. 22p.

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Academic Journal

Molecular basis for thiocarboxylation and release of Urm1 by its E1-activating enzyme Uba4.

Authors : Sokołowski, Mikołaj^1,2 (AUTHOR); Kwasna, Dominika¹ (AUTHOR); Ravichandran, Keerthiraju E^1,2 (AUTHOR)

Subjects: *Transfer RNA; *Structural models; *Uridine

Source: Nucleic Acids Research. 12/11/2024, Issue 22, p13980-13995. 16p.

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Academic Journal

Trans-complementation by the RecB nuclease domain of RecBCD enzyme reveals new insight into RecA loading upon χ recognition

Authors : Pavankumar, Theetha L; Wong, C Jason; Wong, Yun Ka

Subjects: Biochemistry and Cell Biology; Biological Sciences; DNA

Source: Nucleic Acids Research. 52(5)

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Academic Journal

Interpreting CRISPR-Cas12a enzyme kinetics through free energy change of nucleic acids

Authors : Jiongyu Zhang; Xin Guan; Jeong Moon

Subjects: 0303 health sciences; 03 medical and health sciences; Nucleic Acid Enzymes

Source: Nucleic Acids Res

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Academic Journal

Plant Metabolic Network 16: expansion of underrepresented plant groups and experimentally supported enzyme data

Authors : Charles Hawkins; Bo Xue; Farida Yasmin

Subjects: 0301 basic medicine; Databases; 03 medical and health sciences

Source: Nucleic Acids ResNucleic Acids Research, vol 53, iss D1

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Interpreting CRISPR-Cas12a enzyme kinetics through free energy change of nucleic acids.

Plant Metabolic Network 16: expansion of underrepresented plant groups and experimentally supported enzyme data.

Systematic analysis of specificities and flanking sequence preferences of bacterial DNA-(cytosine C5)-methyltransferases reveals mechanisms of enzyme- and sequence-specific DNA readout.

Identification of an enzyme with strong single-stranded DNA ligation activity and its application for sequencing.

Cryo-EM structures of DNA-free and DNA-bound BsaXI: architecture of a Type IIB restriction–modification enzyme Open Access.

Distinct structural and functional heterochromatin partitioning of lamin B1 and lamin B2 revealed using genome-wide nicking enzyme epitope targeted DNA sequencing.

Molecular basis for thiocarboxylation and release of Urm1 by its E1-activating enzyme Uba4.

Trans-complementation by the RecB nuclease domain of RecBCD enzyme reveals new insight into RecA loading upon χ recognition

Interpreting CRISPR-Cas12a enzyme kinetics through free energy change of nucleic acids

Plant Metabolic Network 16: expansion of underrepresented plant groups and experimentally supported enzyme data

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