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Meta-analysis of single-cell RNA sequencing co-expression in human neural organoids reveals their high variability in recapitulating primary tissue.

• Authors : Werner, Jonathan M.¹ (AUTHOR); Gillis, Jesse^1,2 (AUTHOR)

• Source: PLoS Biology. 12/2/2024, Vol. 22 Issue 12, p1-34. 34p.

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Transcriptomic analysis of the 12 major human breast cell types reveals mechanisms of cell and tissue function.

• Authors : Del Toro K; Department of Biochemistry and Molecular Biology, University of New Mexico School of Medicine, University of New Mexico, Albuquerque, New Mexico, United States of America.; Sayaman R

Subjects: Gene Expression Profiling*/Gene Expression Profiling*/Gene Expression Profiling*/methods ; Transcriptome*/Transcriptome*/Transcriptome*/genetics ; Breast*/Breast*/Breast*/metabolism

• Source: PLoS biology [PLoS Biol] 2024 Nov 05; Vol. 22 (11), pp. e3002820. Date of Electronic Publication: 2024 Nov 05 (Print Publication: 2024).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101183755 Publication Model: eCollection Cited Medium: Internet

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Evaluation of RNAi and CRISPR technologies by large-scale gene expression profiling in the Connectivity Map.

• Authors : Smith I; Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.; Greenside PG

Subjects: Clustered Regularly Interspaced Short Palindromic Repeats* ; Gene Expression Profiling*; Gene Regulatory Networks/Gene Regulatory Networks/Gene Regulatory Networks/*genetics

• Source: PLoS biology [PLoS Biol] 2017 Nov 30; Vol. 15 (11), pp. e2003213. Date of Electronic Publication: 2017 Nov 30 (Print Publication: 2017).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101183755 Publication Model: eCollection Cited Medium: Internet

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Pleiotropic hubs drive bacterial surface competition through parallel changes in colony composition and expansion.

• Authors : van Gestel J; Department of Evolutionary Biology and Environmental Studies, University of Zürich, Zürich, Switzerland.; Swiss Institute of Bioinformatics, Lausanne, Switzerland.

Subjects: Bacteria* ; Gene Expression Profiling*; Mutation

• Source: PLoS biology [PLoS Biol] 2023 Oct 16; Vol. 21 (10), pp. e3002338. Date of Electronic Publication: 2023 Oct 16 (Print Publication: 2023).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101183755 Publication Model: eCollection Cited Medium: Internet

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Comparative single-cell transcriptional atlases of Babesia species reveal conserved and species-specific expression profiles.

• Authors : Rezvani, Yasaman¹ (AUTHOR); Keroack, Caroline D.² (AUTHOR); Elsworth, Brendan² (AUTHOR)

• Source: PLoS Biology. 9/22/2022, Vol. 20 Issue 9, p1-32. 32p. 2 Diagrams, 7 Graphs, 1 Map.

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A field-wide assessment of differential expression profiling by high-throughput sequencing reveals widespread bias.

• Authors : Päll T; Institute of Biomedicine and Translational Medicine, University of Tartu, Tartu, Estonia.; Luidalepp H

Subjects: Gene Expression Profiling*/Gene Expression Profiling*/Gene Expression Profiling*/methods ; High-Throughput Nucleotide Sequencing*; Sequence Analysis, RNA/Sequence Analysis, RNA/Sequence Analysis, RNA/methods

• Source: PLoS biology [PLoS Biol] 2023 Mar 02; Vol. 21 (3), pp. e3002007. Date of Electronic Publication: 2023 Mar 02 (Print Publication: 2023).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101183755 Publication Model: eCollection Cited Medium: Internet

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Day-night and seasonal variation of human gene expression across tissues.

• Authors : Wucher V; Centre for Genomic Regulation, Barcelona Institute of Science and Technology, Barcelona, Spain.; MeLiS, SynatAc Team, UCBL1-CNRS UMR5284-Inserm U1314, Lyon, France.

Subjects: Gene Expression Profiling* ; Transcriptome*/Transcriptome*/Transcriptome*/genetics; Humans

• Source: PLoS biology [PLoS Biol] 2023 Feb 06; Vol. 21 (2), pp. e3001986. Date of Electronic Publication: 2023 Feb 06 (Print Publication: 2023).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101183755 Publication Model: eCollection Cited Medium: Internet

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Single-cell and spatiotemporal profile of ovulation in the mouse ovary.

• Authors : Huang R; Thayer School of Engineering at Dartmouth College, Hanover, New Hampshire, United States of America.; Kratka CE

Subjects: Ovulation*/Ovulation*/Ovulation*/genetics ; Ovulation*/Ovulation*/Ovulation*/physiology ; Single-Cell Analysis*/Single-Cell Analysis*/Single-Cell Analysis*/methods

• Source: PLoS biology [PLoS Biol] 2025 Jun 24; Vol. 23 (6), pp. e3003193. Date of Electronic Publication: 2025 Jun 24 (Print Publication: 2025).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101183755 Publication Model: eCollection Cited Medium: Internet

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Multinucleated giant cells are hallmarks of ovarian aging with unique immune and degradation-associated molecular signatures.

• Authors : Converse A; Department of Obstetrics and Gynecology, Feinberg School of Medicine, Northwestern University, Chicago, Illinois, United States of America.; Perry MJ

Subjects: Ovary*/Ovary*/Ovary*/metabolism ; Ovary*/Ovary*/Ovary*/immunology ; Ovary*/Ovary*/Ovary*/cytology

• Source: PLoS biology [PLoS Biol] 2025 Jun 23; Vol. 23 (6), pp. e3003204. Date of Electronic Publication: 2025 Jun 23 (Print Publication: 2025).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101183755 Publication Model: eCollection Cited Medium: Internet

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Rhythm profiling using COFE reveals multi-omic circadian rhythms in human cancers in vivo.

• Authors : Ananthasubramaniam B; Institute for Theoretical Biology, Humboldt Universität zu Berlin, Berlin, Germany.; Venkataramanan R

Subjects: Circadian Rhythm*/Circadian Rhythm*/Circadian Rhythm*/genetics ; Circadian Rhythm*/Circadian Rhythm*/Circadian Rhythm*/physiology ; Neoplasms*/Neoplasms*/Neoplasms*/genetics

• Source: PLoS biology [PLoS Biol] 2025 May 27; Vol. 23 (5), pp. e3003196. Date of Electronic Publication: 2025 May 27 (Print Publication: 2025).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101183755 Publication Model: eCollection Cited Medium: Internet

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