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Academic Journal

Neural network approaches, including use of topological data analysis, enhance classification of human induced pluripotent stem cell colonies by treatment condition

Authors : Alexander Ruys de Perez; Paul E. Anderson; Elena S. Dimitrova

Subjects: QH301-705.5; Biology (General); Research Article

Source: PLoS Comput BiolPLoS Computational Biology, Vol 21, Iss 7, p e1012801 (2025)

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Academic Journal

Federated privacy-protected meta- and mega-omics data analysis in multi-center studies with a fully open-source analytic platform

Authors : Xavier Escriba-Montagut; Yannick Marcon; Augusto Anguita-Ruiz

Subjects: Data Analysis; 0301 basic medicine; 0303 health sciences

Source: PLoS Comput BiolPLoS Computational Biology, Vol 20, Iss 12, p e1012626 (2024)

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Academic Journal

AWGE-ESPCA: An edge sparse PCA model based on adaptive noise elimination regularization and weighted gene network for Hermetia illucens genomic data analysis

Authors : Rui Miao; Hao-Yang Yu; Bing-Jie Zhong

Subjects: QH301-705.5; Genome, Insect; Animals

Source: PLoS Comput BiolPLoS Computational Biology, Vol 21, Iss 2, p e1012773 (2025)

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Academic Journal

scMoMtF: An interpretable multitask learning framework for single-cell multi-omics data analysis

Authors : Wei Lan; Tongsheng Ling; Qingfeng Chen

Subjects: 0301 basic medicine; QH301-705.5; 0206 medical engineering

Source: PLoS Comput BiolPLoS Computational Biology, Vol 20, Iss 12, p e1012679 (2024)

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Academic Journal

Topological data analysis reveals core heteroblastic and ontogenetic programs embedded in leaves of grapevine (Vitaceae) and maracuyá (Passifloraceae)

Authors : Sarah Percival; Joyce G. Onyenedum; Daniel H. Chitwood

Subjects: Plant Leaves; Data Analysis; Vitaceae

Source: PLoS Comput BiolPLoS Computational Biology, Vol 20, Iss 2, p e1011845 (2024)

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Academic Journal

Ten simple rules for initial data analysis

Authors : Mark Baillie; Saskia le Cessie; Carsten Oliver Schmidt

Subjects: Data Analysis; Ovarian Neoplasms; 0301 basic medicine

Source: PLoS Comput BiolPLoS Computational Biology, Vol 18, Iss 2 (2022)PLoS Computational Biology, Vol 18, Iss 2, p e1009819 (2022)

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Academic Journal

CHOIRBM: An R package for exploratory data analysis and interactive visualization of pain patient body map data

Authors : Eric Cramer; Maisa Ziadni; Kristen Hymel Scherrer

Subjects: Data Analysis; 03 medical and health sciences; 0302 clinical medicine

Source: PLoS Comput BiolPLoS Computational Biology, Vol 18, Iss 10, p e1010496 (2022)

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Academic Journal

Quantifying ecosystem states and state transitions of the Upper Mississippi River System using topological data analysis

Authors : Danelle Marie Larson; Wako Bungula; Casey McKean

Subjects: Rivers; 13. Climate action; QH301-705.5

Source: PLoS Comput BiolPLoS Computational Biology, Vol 19, Iss 6, p e1011147 (2023)

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Academic Journal

Tracking collective cell motion by topological data analysis

Authors : Ana Carpio; Carolina Trenado; Luis L. Bonilla ...

Subjects: Data Analysis; 0301 basic medicine; Wound Healing

Source: PLoS Comput Biole-Archivo. Repositorio Institucional de la Universidad Carlos III de MadridUniversidad Carlos III de Madrid (UC3M)Docta ComplutenseinstnameE-Prints

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Academic Journal

Principles for data analysis workflows

Authors : Sara Stoudt; Váleri N. Vásquez; Ciera C. Martinez

Subjects: Data Analysis; FOS: Computer and information sciences; 0301 basic medicine

Source: PLoS Comput BiolPLoS Computational Biology, Vol 17, Iss 3, p e1008770 (2021)

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