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Biomathematical enzyme kinetics model of prebiotic autocatalytic RNA networks: degenerating parasite-specific hyperparasite catalysts confer parasite resistance and herald the birth of molecular immunity.

• Authors : Pirovino, Magnus¹ (AUTHOR); Iseli, Christian² (AUTHOR); Curran, Joseph A.³ (AUTHOR)

• Source: PLoS Computational Biology. 1/3/2025, Vol. 21 Issue 1, p1-25. 25p.

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Beyond IC50—A computational dynamic model of drug resistance in enzyme inhibition treatment.

• Authors : Roadnight Sheehan, J.¹ (AUTHOR); de Wijn, Astrid S.¹ (AUTHOR) ; Freire, Thales Souza² (AUTHOR)

• Source: PLoS Computational Biology. 11/7/2024, Vol. 20 Issue 11, p1-27. 27p.

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Harnessing the optimization of enzyme catalytic rates in engineering of metabolic phenotypes.

• Authors : Razaghi-Moghadam, Zahra^1,2 (AUTHOR) ; Soleymani Babadi, Fayaz^1,2 (AUTHOR); Nikoloski, Zoran^1,2 (AUTHOR)

• Source: PLoS Computational Biology. 11/4/2024, Vol. 20 Issue 11, p1-20. 20p.

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Stochastic modelling of a three-dimensional glycogen granule synthesis and impact of the branching enzyme.

• Authors : Rousset Y; Institute for Quantitative and Theoretical Biology, Heinrich-Heine University, Düsseldorf, Germany.; Institute for Computational Cell Biology, Heinrich-Heine University, Düsseldorf, Germany.

Subjects: 1,4-alpha-Glucan Branching Enzyme*/1,4-alpha-Glucan Branching Enzyme*/1,4-alpha-Glucan Branching Enzyme*/chemistry ; 1,4-alpha-Glucan Branching Enzyme*/1,4-alpha-Glucan Branching Enzyme*/1,4-alpha-Glucan Branching Enzyme*/genetics ; 1,4-alpha-Glucan Branching Enzyme*/1,4-alpha-Glucan Branching Enzyme*/1,4-alpha-Glucan Branching Enzyme*/metabolism

• Source: PLoS computational biology [PLoS Comput Biol] 2023 May 19; Vol. 19 (5), pp. e1010694. Date of Electronic Publication: 2023 May 19 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Leveraging conformal prediction to annotate enzyme function space with limited false positives.

• Authors : Ding, Kerr¹ (AUTHOR); Luo, Jiaqi¹ (AUTHOR); Luo, Yunan¹ (AUTHOR)

• Source: PLoS Computational Biology. 5/29/2024, Vol. 20 Issue 5, p1-21. 21p.

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A multimodal Transformer Network for protein-small molecule interactions enhances predictions of kinase inhibition and enzyme-substrate relationships.

• Authors : Kroll, Alexander¹ (AUTHOR); Ranjan, Sahasra² (AUTHOR); Lercher, Martin J.¹ (AUTHOR)

• Source: PLoS Computational Biology. 5/20/2024, Vol. 20 Issue 5, p1-23. 23p.

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Decomposing bulk signals to reveal hidden information in processive enzyme reactions: A case study in mRNA translation

• Authors : Haase, Nadin; Holtkamp, Wolf; Christ, Simon ...

Subjects: Dewey Decimal Classification::500 | Naturwissenschaften::570 | Biowissenschaften, Biologie; protein synthesis; hidden information

• Source: PLoS Comput BiolPLoS Computational Biology, Vol 20, Iss 3, p e1011918 (2024)PLOS Computational Biology

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PARROT: Prediction of enzyme abundances using protein-constrained metabolic models.

• Authors : Ferreira, Mauricio Alexander de Moura¹ (AUTHOR); Silveira, Wendel Batista da¹ (AUTHOR); Nikoloski, Zoran^2,3 (AUTHOR)

• Source: PLoS Computational Biology. 10/19/2023, Vol. 19 Issue 10, p1-17. 17p. 4 Graphs.

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Varying molecular interactions explain aspects of crowder-dependent enzyme function of a viral protease.

• Authors : Ostrowska, Natalia¹ (AUTHOR); Feig, Michael² (AUTHOR) ; Trylska, Joanna¹ (AUTHOR)

• Source: PLoS Computational Biology. 4/25/2023, Vol. 19 Issue 4, p1-33. 33p. 1 Color Photograph, 4 Diagrams, 3 Charts, 5 Graphs.

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A multimodal Transformer Network for protein-small molecule interactions enhances predictions of kinase inhibition and enzyme-substrate relationships.

• Authors : Alexander Kroll; Sahasra Ranjan; Martin J Lercher

Subjects: Biology (General); QH301-705.5

• Source: PLoS Computational Biology, Vol 20, Iss 5, p e1012100 (2024)

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