Search Results

Accounting for contact tracing in epidemiological birth-death models.

• Authors : Zhukova A; G5 Evolutionary Dynamics of Infectious Diseases, Institut Pasteur, Université de Paris, Paris, France.; Bioinformatics and Biostatistics Hub, Institut Pasteur, Université de Paris, Paris, France.

Subjects: Contact Tracing*/Contact Tracing*/Contact Tracing*/methods ; Contact Tracing*/Contact Tracing*/Contact Tracing*/statistics & numerical data ; Epidemiological Models*

• Source: PLoS computational biology [PLoS Comput Biol] 2025 May 29; Vol. 21 (5), pp. e1012461. Date of Electronic Publication: 2025 May 29 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Fitting dynamic measles models to subnational case notification data from Ethiopia: Methodological challenges and key considerations.

• Authors : Sbarra AN; Institute for Health Metrics and Evaluation, University of Washington, Seattle, Washington, United States of America.; Department of Infectious Disease Epidemiology, London School of Hygiene & Tropical Medicine, London, United Kingdom.

Subjects: Measles*/Measles*/Measles*/epidemiology ; Measles*/Measles*/Measles*/transmission ; Measles*/Measles*/Measles*/prevention & control

• Source: PLoS computational biology [PLoS Comput Biol] 2025 Apr 16; Vol. 21 (4), pp. e1012922. Date of Electronic Publication: 2025 Apr 16 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Supervised fine-tuning of pre-trained antibody language models improves antigen specificity prediction.

• Authors : Wang, Meng¹ (AUTHOR); Patsenker, Jonathan² (AUTHOR); Li, Henry² (AUTHOR)

• Source: PLoS Computational Biology. 3/31/2025, Vol. 21 Issue 3, p1-15. 15p.

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BlueRecording: A pipeline for the efficient calculation of extracellular recordings in large-scale neural circuit models.

• Authors : Tharayil JJ; Blue Brain Project, École polytechnique fédérale de Lausanne (EPFL) Campus Biotech, Geneva, Switzerland.; Blanco Alonso J

Subjects: Models, Neurological* ; Nerve Net*/Nerve Net*/Nerve Net*/physiology; Animals

• Source: PLoS computational biology [PLoS Comput Biol] 2025 May 23; Vol. 21 (5), pp. e1013023. Date of Electronic Publication: 2025 May 23 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Vertex models capturing subcellular scales in epithelial tissues.

• Authors : Lange Z; Frankfurt Institute for Advanced Studies, Frankfurt am Main, Germany.; Department of Physics, Goethe-Universität Frankfurt am Main, Frankfurt am Main, Germany.

Subjects: Models, Biological* ; Epithelial Cells*/Epithelial Cells*/Epithelial Cells*/cytology ; Epithelial Cells*/Epithelial Cells*/Epithelial Cells*/physiology

• Source: PLoS computational biology [PLoS Comput Biol] 2025 May 21; Vol. 21 (5), pp. e1012993. Date of Electronic Publication: 2025 May 21 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Capturing the emergent dynamical structure in biophysical neural models.

• Authors : Milinkovic B; Melbourne School of Psychological Sciences, University of Melbourne, Melbourne, Australia.; Sussex Centre for Consciousness Science, University of Sussex, Brighton, United Kingdom.

Subjects: Models, Neurological* ; Nerve Net*/Nerve Net*/Nerve Net*/physiology; Computational Biology

• Source: PLoS computational biology [PLoS Comput Biol] 2025 May 12; Vol. 21 (5), pp. e1012572. Date of Electronic Publication: 2025 May 12 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Dual-use capabilities of concern of biological AI models.

• Authors : Pannu J; Center for Health Security, Bloomberg School of Public Health, Johns Hopkins University, Baltimore, Maryland.; Department of Health Policy, Stanford School of Medicine, Stanford University, Stanford, California, United States of America.

Subjects: Artificial Intelligence* ; Models, Biological*; Humans

• Source: PLoS computational biology [PLoS Comput Biol] 2025 May 08; Vol. 21 (5), pp. e1012975. Date of Electronic Publication: 2025 May 08 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Filter-based models of suppression in retinal ganglion cells: Comparison and generalization across species and stimuli.

• Authors : Shahidi N; Department of Ophthalmology, University Medical Center Göttingen, Göttingen, Germany.; Bernstein Center for Computational Neuroscience Göttingen, Göttingen, Germany.

Subjects: Retinal Ganglion Cells*/Retinal Ganglion Cells*/Retinal Ganglion Cells*/physiology ; Models, Neurological*; Animals

• Source: PLoS computational biology [PLoS Comput Biol] 2025 May 02; Vol. 21 (5), pp. e1013031. Date of Electronic Publication: 2025 May 02 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Large scale paired antibody language models.

• Authors : Kenlay, Henry¹ (AUTHOR); Dreyer, Frédéric A.¹ (AUTHOR) ; Kovaltsuk, Aleksandr¹ (AUTHOR)

• Source: PLoS Computational Biology. 12/6/2024, Vol. 20 Issue 12, p1-13. 13p.

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Benchmarking residue-resolution protein coarse-grained models for simulations of biomolecular condensates.

• Authors : Feito, Alejandro¹ (AUTHOR); Sanchez-Burgos, Ignacio² (AUTHOR); Tejero, Ignacio¹ (AUTHOR)

• Source: PLoS Computational Biology. 1/13/2025, Vol. 21 Issue 1, p1-32. 32p.

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