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Academic Journal

Using interactive Jupyter Notebooks and BioConda for FAIR and reproducible biomolecular simulation workflows.

  • Authors : Bayarri G; Institute for Research in Biomedicine (IRB Barcelona), the Barcelona Institute of Science and Technology, Barcelona, Spain.; Andrio P

Subjects: Software* ; Molecular Dynamics Simulation* ; Workflow*

  • Source: PLoS computational biology [PLoS Comput Biol] 2024 Jun 20; Vol. 20 (6), pp. e1012173. Date of Electronic Publication: 2024 Jun 20 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

Measuring and understanding information storage and transfer in a simulated human gut microbiome.

  • Authors : Zoller H; Department Geoinformation, Helmholtz Centre Potsdam - GFZ German Research Centre for Geosciences, Potsdam, Germany.; Garcia Perez C

Subjects: Gastrointestinal Microbiome*/Gastrointestinal Microbiome*/Gastrointestinal Microbiome*/physiology ; Computer Simulation*; Humans

  • Source: PLoS computational biology [PLoS Comput Biol] 2024 Sep 17; Vol. 20 (9), pp. e1012359. Date of Electronic Publication: 2024 Sep 17 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

Information dynamics of in silico EEG Brain Waves: Insights into oscillations and functions.

  • Authors : Menesse G; Department of Electromagnetism and Physics of the Matter & Institute Carlos I for Theoretical and Computational Physics, University of Granada, Granada, Spain.; Departamento de Física, Facultad de Ciencias Exactas y Naturales, Universidad Nacional de Asunción, San Lorenzo, Paraguay.

Subjects: Electroencephalography* ; Models, Neurological* ; Computer Simulation*

  • Source: PLoS computational biology [PLoS Comput Biol] 2024 Sep 05; Vol. 20 (9), pp. e1012369. Date of Electronic Publication: 2024 Sep 05 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

Quantifying the risk of spillover reduction programs for human health.

  • Authors : Nuismer SL; Department of Biological Sciences, University of Idaho, Moscow, Idaho, United States of America.; Basinski AJ

Subjects: Computer Simulation* ; Zoonoses*/Zoonoses*/Zoonoses*/transmission ; Zoonoses*/Zoonoses*/Zoonoses*/epidemiology

  • Source: PLoS computational biology [PLoS Comput Biol] 2024 Aug 15; Vol. 20 (8), pp. e1012358. Date of Electronic Publication: 2024 Aug 15 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

Alternate conformational trajectories in ribosome translocation.

  • Authors : Alejo JL; Department of Genetics, Cell Biology and Development, University of Minnesota, Minneapolis, Minnesota, United States of America.; Girodat D

Subjects: Ribosomes*/Ribosomes*/Ribosomes*/metabolism ; Ribosomes*/Ribosomes*/Ribosomes*/chemistry ; RNA, Transfer*/RNA, Transfer*/RNA, Transfer*/metabolism

  • Source: PLoS computational biology [PLoS Comput Biol] 2024 Aug 14; Vol. 20 (8), pp. e1012319. Date of Electronic Publication: 2024 Aug 14 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

Impact of oxygen and glucose availability on the viability and connectivity of islet cells: A computational study of reconstructed avascular human islets.

  • Authors : Félix-Martínez GJ; Investigadoras e investigadores por México, Consejo Nacional de Humanidades, Ciencias y Tecnologías, México City, México.; Department of Electrical Engineering, Universidad Autónoma Metropolitana, Iztapalapa, México City, México.

Subjects: Islets of Langerhans*/Islets of Langerhans*/Islets of Langerhans*/metabolism ; Islets of Langerhans*/Islets of Langerhans*/Islets of Langerhans*/cytology ; Islets of Langerhans*/Islets of Langerhans*/Islets of Langerhans*/blood supply

  • Source: PLoS computational biology [PLoS Comput Biol] 2024 Aug 13; Vol. 20 (8), pp. e1012357. Date of Electronic Publication: 2024 Aug 13 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

Credibility assessment of in silico clinical trials for medical devices.

  • Authors : Pathmanathan P; Center for Devices and Radiological Health, US Food and Drug Administration, Silver Spring, Maryland, United States of America.; Aycock K

Subjects: Computer Simulation* ; Clinical Trials as Topic* ; Equipment and Supplies*/Equipment and Supplies*/Equipment and Supplies*/standards

  • Source: PLoS computational biology [PLoS Comput Biol] 2024 Aug 08; Vol. 20 (8), pp. e1012289. Date of Electronic Publication: 2024 Aug 08 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

Molecular dynamics simulations reveal how vinculin refolds partially unfolded talin rod helices to stabilize them against mechanical force.

  • Authors : Mykuliak VV; Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland.; Rahikainen R

Subjects: Vinculin*/Vinculin*/Vinculin*/metabolism ; Vinculin*/Vinculin*/Vinculin*/chemistry ; Talin*/Talin*/Talin*/metabolism

  • Source: PLoS computational biology [PLoS Comput Biol] 2024 Aug 07; Vol. 20 (8), pp. e1012341. Date of Electronic Publication: 2024 Aug 07 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

Derivation and simulation of a computational model of active cell populations: How overlap avoidance, deformability, cell-cell junctions and cytoskeletal forces affect alignment.

  • Authors : Leech V; Department of Mathematics, University College London, London, United Kingdom.; Kenny FN

Subjects: Cytoskeleton*/Cytoskeleton*/Cytoskeleton*/physiology ; Intercellular Junctions*/Intercellular Junctions*/Intercellular Junctions*/physiology ; Models, Biological*

  • Source: PLoS computational biology [PLoS Comput Biol] 2024 Jul 29; Vol. 20 (7), pp. e1011879. Date of Electronic Publication: 2024 Jul 29 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

Spatial information allows inference of the prevalence of direct cell-to-cell viral infection.

  • Authors : Williams T; School of Mathematics and Statistics, University of Melbourne, Melbourne, Australia.; McCaw JM

Subjects: Virus Diseases*/Virus Diseases*/Virus Diseases*/epidemiology ; Virus Diseases*/Virus Diseases*/Virus Diseases*/virology ; Computational Biology*

  • Source: PLoS computational biology [PLoS Comput Biol] 2024 Jul 23; Vol. 20 (7), pp. e1012264. Date of Electronic Publication: 2024 Jul 23 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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  • 1-10 of  8,382 results for ""Simulation""