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Genome-wide association study between SARS-CoV-2 single nucleotide polymorphisms and virus copies during infections.

Authors : Li, Ke^1,2 (AUTHOR) ; Chaguza, Chrispin^1,2 (AUTHOR); Stamp, Julian³ (AUTHOR)

Source: PLoS Computational Biology. 9/17/2024, Vol. 20 Issue 9, p1-18. 18p.

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In silico analyses identify sequence contamination thresholds for Nanopore-generated SARS-CoV-2 sequences.

Authors : Bolaji, Ayooluwa J.^1,2 (AUTHOR); Duggan, Ana T.¹ (AUTHOR)

Source: PLoS Computational Biology. 8/19/2024, Vol. 20 Issue 8, p1-17. 17p.

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Assessing the performance of methods for cell clustering from single-cell DNA sequencing data.

Authors : Khan, Rituparna¹ (AUTHOR); Mallory, Xian¹ (AUTHOR)

Source: PLoS Computational Biology. 10/12/2023, Vol. 19 Issue 10, p1-33. 33p. 1 Illustration, 10 Charts, 12 Graphs.

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Single nucleotide polymorphisms affect RNA-protein interactions at a distance through modulation of RNA secondary structures.

Authors : Shatoff, Elan^1,2 (AUTHOR); Bundschuh, Ralf^1,2,3,4 (AUTHOR)

Source: PLoS Computational Biology. 5/7/2020, Vol. 16 Issue 5, p1-16. 16p. 1 Diagram, 1 Chart, 5 Graphs.

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Single Nucleotide Polymorphisms Can Create Alternative Polyadenylation Signals and Affect Gene Expression through Loss of MicroRNA-Regulation.

Authors : Thomas, Laurent F.^1,2; Sætrom, På^1,2,3

Source: PLoS Computational Biology. Aug2012, Vol. 8 Issue 8, p1-12. 12p. 1 Diagram, 2 Charts, 6 Graphs.

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Neutral vs. non-neutral genetic footprints of Plasmodium falciparum multiclonal infections.

Authors : Labbé, Frédéric¹ (AUTHOR); He, Qixin² (AUTHOR); Zhan, Qi¹ (AUTHOR)

Source: PLoS Computational Biology. 1/3/2023, Vol. 19 Issue 1, p1-28. 28p. 1 Chart, 3 Graphs.

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Tool evaluation for the detection of variably sized indels from next generation whole genome and targeted sequencing data.

Authors : Wang, Ning¹ (AUTHOR); Lysenkov, Vladislav¹ (AUTHOR); Orte, Katri^2,3 (AUTHOR)

Source: PLoS Computational Biology. 2/17/2022, Vol. 18 Issue 2, p1-27. 27p. 4 Charts, 9 Graphs.

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One is not enough: On the effects of reference genome for the mapping and subsequent analyses of short-reads.

Authors : Valiente-Mullor, Carlos¹ (AUTHOR); Beamud, Beatriz¹ (AUTHOR) ; Ansari, Iván¹ (AUTHOR)

Source: PLoS Computational Biology. 1/27/2021, Vol. 17 Issue 1, p1-29. 29p. 5 Diagrams, 3 Charts, 8 Graphs.

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Academic Journal

Genetic dissection of complex traits using hierarchical biological knowledge.

Authors : Tanaka, Hidenori¹ (AUTHOR); Kreisberg, Jason F.¹ (AUTHOR) ; Ideker, Trey¹ (AUTHOR)

Source: PLoS Computational Biology. 9/17/2021, Vol. 17 Issue 9, p1-22. 22p. 4 Diagrams, 2 Graphs.

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Estimating individuals' genetic and non-genetic effects underlying infectious disease transmission from temporal epidemic data.

Authors : Pooley, Christopher M.^1,2 (AUTHOR) ; Marion, Glenn² (AUTHOR); Bishop, Stephen C.¹ (AUTHOR)

Source: PLoS Computational Biology. 12/21/2020, Vol. 16 Issue 12, p1-33. 33p. 1 Color Photograph, 1 Chart, 9 Graphs.

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Genome-wide association study between SARS-CoV-2 single nucleotide polymorphisms and virus copies during infections.

In silico analyses identify sequence contamination thresholds for Nanopore-generated SARS-CoV-2 sequences.

Assessing the performance of methods for cell clustering from single-cell DNA sequencing data.

Single nucleotide polymorphisms affect RNA-protein interactions at a distance through modulation of RNA secondary structures.

Single Nucleotide Polymorphisms Can Create Alternative Polyadenylation Signals and Affect Gene Expression through Loss of MicroRNA-Regulation.

Neutral vs. non-neutral genetic footprints of Plasmodium falciparum multiclonal infections.

Tool evaluation for the detection of variably sized indels from next generation whole genome and targeted sequencing data.

One is not enough: On the effects of reference genome for the mapping and subsequent analyses of short-reads.

Genetic dissection of complex traits using hierarchical biological knowledge.

Estimating individuals' genetic and non-genetic effects underlying infectious disease transmission from temporal epidemic data.

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