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Marked point process variational autoencoder with applications to unsorted spiking activities.

• Authors : Shibue, Ryohei¹ (AUTHOR) ; Iwata, Tomoharu² (AUTHOR)

• Source: PLoS Computational Biology. 12/30/2024, Vol. 20 Issue 12, p1-31. 31p.

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A variational autoencoder trained with priors from canonical pathways increases the interpretability of transcriptome data.

• Authors : Liu, Bin¹ (AUTHOR); Rosenhahn, Bodo² (AUTHOR); Illig, Thomas^1,3 (AUTHOR)

• Source: PLoS Computational Biology. 7/3/2024, Vol. 20 Issue 7, p1-22. 22p.

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Marked point process variational autoencoder with applications to unsorted spiking activities

• Authors : Ryohei Shibue; Tomoharu Iwata

Subjects: Biology (General); QH301-705.5

• Source: PLoS Computational Biology, Vol 20, Iss 12 (2024)

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Predicting drug polypharmacology from cell morphology readouts using variational autoencoder latent space arithmetic.

• Authors : Chow, Yuen Ler^1,2 (AUTHOR); Singh, Shantanu¹ (AUTHOR); Carpenter, Anne E.¹ (AUTHOR)

• Source: PLoS Computational Biology. 2/25/2022, Vol. 18 Issue 2, p1-21. 21p. 4 Diagrams, 2 Charts, 1 Graph.

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Mixture-of-Experts Variational Autoencoder for clustering and generating from similarity-based representations on single cell data.

• Authors : Kopf, Andreas^1,2 (AUTHOR); Fortuin, Vincent^3,4 (AUTHOR); Somnath, Vignesh Ram¹ (AUTHOR)

• Source: PLoS Computational Biology. 6/30/2021, Vol. 17 Issue 6, p1-17. 17p. 2 Diagrams, 3 Charts, 2 Graphs.

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A variational autoencoder trained with priors from canonical pathways increases the interpretability of transcriptome data

• Authors : Bin Liu; Bodo Rosenhahn; Thomas Illig

Subjects: Deep Learning; QH301-705.5; Gene Expression Profiling

• Source: PLoS Comput BiolPLoS Computational Biology, Vol 20, Iss 7, p e1011198 (2024)

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Predicting drug polypharmacology from cell morphology readouts using variational autoencoder latent space arithmetic

• Authors : Yuen Ler Chow; Gregory P. Way; Anne E. Carpenter

Subjects: Machine Learning; QH301-705.5; Polypharmacology

• Source: PLoS Comput BiolPLoS Computational Biology, Vol 18, Iss 2, p e1009888 (2022)

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BuDDI: Bulk Deconvolution with Domain Invariance to predict cell-type-specific perturbations from bulk.

• Authors : Davidson, Natalie R.¹ (AUTHOR); Zhang, Fan^1,2 (AUTHOR); Greene, Casey S.¹ (AUTHOR)

• Source: PLoS Computational Biology. 1/17/2025, Vol. 21 Issue 1, p1-22. 22p.

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Predicting proprioceptive cortical anatomy and neural coding with topographic autoencoders.

• Authors : Grogan, Max¹ (AUTHOR); Blum, Kyle P.² (AUTHOR); Wu, Yufei¹ (AUTHOR)

• Source: PLoS Computational Biology. 12/4/2024, Vol. 20 Issue 12, p1-24. 24p.

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AI reveals insights into link between CD33 and cognitive impairment in Alzheimer's Disease.

• Authors : Raschka, Tamara^1,2,3 (AUTHOR) ; Sood, Meemansa^1,2 (AUTHOR); Schultz, Bruce¹ (AUTHOR)

• Source: PLoS Computational Biology. 2/13/2023, Vol. 19 Issue 2, p1-24. 24p.

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