Search Results

A phylogenetic method linking nucleotide substitution rates to rates of continuous trait evolution.

• Authors : Gemmell, Patrick^1,2 (AUTHOR); Sackton, Timothy B.³ (AUTHOR); Edwards, Scott V.¹ (AUTHOR)

• Source: PLoS Computational Biology. 4/24/2024, Vol. 20 Issue 4, p1-18. 18p.

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Genome-wide association study between SARS-CoV-2 single nucleotide polymorphisms and virus copies during infections.

• Authors : Li K; Yale SARS-CoV-2 Genomic Surveillance Initiative

Subjects: Polymorphism, Single Nucleotide*/Polymorphism, Single Nucleotide*/Polymorphism, Single Nucleotide*/genetics ; SARS-CoV-2*/SARS-CoV-2*/SARS-CoV-2*/genetics ; Genome-Wide Association Study*/Genome-Wide Association Study*/Genome-Wide Association Study*/methods

• Source: PLoS computational biology [PLoS Comput Biol] 2024 Sep 17; Vol. 20 (9), pp. e1012469. Date of Electronic Publication: 2024 Sep 17 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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iCRBP-LKHA: Large convolutional kernel and hybrid channel-spatial attention for identifying circRNA-RBP interaction sites.

• Authors : Yuan, Lin^1,2,3 (AUTHOR); Zhao, Ling^1,2,3 (AUTHOR); Lai, Jinling^1,2,3 (AUTHOR)

• Source: PLoS Computational Biology. 8/22/2024, Vol. 20 Issue 8, p1-23. 23p.

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In silico analyses identify sequence contamination thresholds for Nanopore-generated SARS-CoV-2 sequences.

• Authors : Bolaji, Ayooluwa J.^1,2 (AUTHOR); Duggan, Ana T.¹ (AUTHOR)

• Source: PLoS Computational Biology. 8/19/2024, Vol. 20 Issue 8, p1-17. 17p.

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Tree polynomials identify a link between co-transcriptional R-loops and nascent RNA folding.

• Authors : Liu, Pengyu¹ (AUTHOR); Lusk, Jacob¹ (AUTHOR); Jonoska, Nataša² (AUTHOR)

• Source: PLoS Computational Biology. 12/13/2024, Vol. 20 Issue 12, p1-24. 24p.

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16S rRNA sequence embeddings: Meaningful numeric feature representations of nucleotide sequences that are convenient for downstream analyses.

• Authors : Woloszynek, Stephen¹; Zhao, Zhengqiao¹; Chen, Jian²

• Source: PLoS Computational Biology. 2/26/2019, Vol. 15 Issue 2, p1-25. 25p. 2 Charts, 9 Graphs.

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A phylogenetic method linking nucleotide substitution rates to rates of continuous trait evolution.

• Authors : Patrick Gemmell; Timothy B Sackton; Scott V Edwards

Subjects: Biology (General); QH301-705.5

• Source: PLoS Computational Biology, Vol 20, Iss 4, p e1011995 (2024)

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Computational Analysis of MDR1 Variants Predicts Effect on Cancer Cells via their Effect on mRNA Folding.

• Authors : Gutman T; Department of Biomedical Engineering, the Engineering Faculty, Tel Aviv University, Tel-Aviv, Israel.; Tuller T

Subjects: ATP Binding Cassette Transporter, Subfamily B*/ATP Binding Cassette Transporter, Subfamily B*/ATP Binding Cassette Transporter, Subfamily B*/genetics ; ATP Binding Cassette Transporter, Subfamily B*/ATP Binding Cassette Transporter, Subfamily B*/ATP Binding Cassette Transporter, Subfamily B*/metabolism ; ATP Binding Cassette Transporter, Subfamily B*/ATP Binding Cassette Transporter, Subfamily B*/ATP Binding Cassette Transporter, Subfamily B*/chemistry

• Source: PLoS computational biology [PLoS Comput Biol] 2024 Dec 26; Vol. 20 (12), pp. e1012685. Date of Electronic Publication: 2024 Dec 26 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Mapping genes for human face shape: Exploration of univariate phenotyping strategies.

• Authors : Yuan M; Department of Electrical Engineering, ESAT/PSI, KU Leuven, Leuven, Belgium.; Department of Human Genetics, KU Leuven, Leuven, Belgium.

Subjects: Face*/Face*/Face*/anatomy & histology ; Phenotype* ; Genome-Wide Association Study*/Genome-Wide Association Study*/Genome-Wide Association Study*/methods

• Source: PLoS computational biology [PLoS Comput Biol] 2024 Dec 02; Vol. 20 (12), pp. e1012617. Date of Electronic Publication: 2024 Dec 02 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Database size positively correlates with the loss of species-level taxonomic resolution for the 16S rRNA and other prokaryotic marker genes.

• Authors : Commichaux, Seth¹ (AUTHOR) ; Luan, Tu^2,3 (AUTHOR); Muralidharan, Harihara Subrahmaniam^2,3 (AUTHOR)

• Source: PLoS Computational Biology. 8/5/2024, Vol. 20 Issue 8, p1-12. 12p.

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