Source: Balázs, Zsolt; Gitchev, Todor; Ivanković, Ivna; Krauthammer, Michael (2024). Fragmentstein—facilitating data reuse for cell-free DNA fragment analysis. Bioinformatics, 40(1):btae017.

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Fast and scalable querying of eukaryotic linear motifs with gget elm

Authors : Luebbert, Laura; Hoang, Chi; Kumar, Manjeet

Subjects: Computational Mathematics; Computational Theory and Mathematics; Computer Science Applications

Source: Bioinformatics, 40(3), btae095, (2024-03)

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A machine-readable specification for genomics assays

Authors : Booeshaghi, Ali Sina; Chen, Xi; Pachter, Lior

Subjects: Computational Mathematics; Computational Theory and Mathematics; Computer Science Applications

Source: Bioinformatics, 40(4), btae168, (2024-04)

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enviRule: an end-to-end system for automatic extraction of reaction patterns from environmental contaminant biotransformation pathways

Authors : Zhang, Kunyang; Fenner, Kathrin;

Subjects: Department of Chemistry; 540 Chemistry; Computational Mathematics

Source: Zhang, Kunyang; Fenner, Kathrin (2023). enviRule: an end-to-end system for automatic extraction of reaction patterns from environmental contaminant biotransformation pathways. Bioinformatics,

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StonPy: a tool to parse and query collections of SBGN maps in a graph database.

Authors : Rougny, Adrien; BALAUR, Irina-Afrodita; Luna, Augustin

Subjects: Databases; Factual; Language

Source: Bioinformatics, 39 (3) (2023-03-01)

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Multimodal learning in clinical proteomics: enhancing antimicrobial resistance prediction models with chemical information.

Authors : Visonà, Giovanni; Duroux, Diane; Miranda, Lucas

Subjects: Anti-Bacterial Agents; Drug Resistance, Bacterial; Machine Learning

Source: Bioinformatics, 39 (12) (2023)

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A low-coverage 3′ RNA-seq to detect homeolog expression in polyploid wheat

Authors : Sun, Jianqiang; Okada, Moeko; Tameshige, Toshiaki

Subjects: Institute of Evolutionary Biology and Environmental Studies; Evolution in Action: From Genomes to Ecosystems; 570 Life sciences

Source: Sun, Jianqiang; Okada, Moeko; Tameshige, Toshiaki; Shimizu-Inatsugi, Rie; Akiyama, Reiko; Nagano, Atsushi J; Sese, Jun; Shimizu, Kentaro K (2023). A low-coverage 3′ RNA-seq to detect homeolog

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Evolutionary processes in the emergence and recent spread of the syphilis agent, Treponema pallidum

Authors : Pla-Díaz, Marta; Sánchez-Busó, Leonor; Giacani, Lorenzo ...

Subjects: Institute of Evolutionary Biology and Environmental Studies; Dermatology Clinic; Institute of Legal Medicine

Source: Pla-Díaz, Marta; Sánchez-Busó, Leonor; Giacani, Lorenzo; Šmajs, David; Bosshard, Philipp P; Bagheri, Homayoun C; Schuenemann, Verena J; Nieselt, Kay; Arora, Natasha; González-Candelas, Fernando

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FRETraj: integrating single-molecule spectroscopy with molecular dynamics

Authors : Steffen, Fabio D; Sigel, Roland K O; Börner, Richard ...

Subjects: Department of Chemistry; 540 Chemistry; Computational Mathematics

Source: Steffen, Fabio D; Sigel, Roland K O; Börner, Richard (2021). FRETraj: integrating single-molecule spectroscopy with molecular dynamics. Bioinformatics, 37(21):3953-3955.

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Newt: a comprehensive web-based tool for viewing, constructing and analyzing biological maps.

Authors : Balci, Hasan; Siper, Metin Can; Saleh, Nasim

Subjects: Animals; Internet; Salamandridae

Source: Bioinformatics, 37 (10), 1475 - 1477 (2021-06-16)

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