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Infrared: a declarative tree decomposition-powered framework for bioinformatics

• Authors : Yao, Hua-Ting; Marchand, Bertrand; Berkemer, Sarah J. ...

Subjects: Bioinformatics Fixed-parameter tractable algorithms Tree decomposition Boltzmann sampling Network phylogeny RNA sequence design RNA alignment Pseudoknots; Bioinformatics; Fixed-parameter tractable algorithms

• Source: ISSN: 1748-7188 ; Algorithms for Molecular Biology ; https://inria.hal.science/hal-04211173 ; Algorithms for Molecular Biology, 2024, ⟨10.1186/s13015-024-00258-2⟩.

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Mono-valent salt corrections for RNA secondary structures in the ViennaRNA package.

• Authors : Yao, Hua-Ting¹ (AUTHOR) ; Lorenz, Ronny¹ (AUTHOR); Hofacker, Ivo L.^1,2 (AUTHOR)

• Source: Algorithms for Molecular Biology. 7/29/2023, Vol. 18 Issue 1, p1-13. 13p.

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