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Academic Journal

Detection of low-abundance bacterial strains in metagenomic datasets by eigengenome partitioning.

  • Authors : Cleary B; Computational and Systems Biology Program, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA.; Broad Institute of Harvard and MIT, Cambridge, Massachusetts, USA.

Subjects: Bacteria/Bacteria/Bacteria/*genetics ; Epigenesis, Genetic/Epigenesis, Genetic/Epigenesis, Genetic/*genetics ; Genome, Bacterial/Genome, Bacterial/Genome, Bacterial/*genetics

  • Source: Nature biotechnology [Nat Biotechnol] 2015 Oct; Vol. 33 (10), pp. 1053-60. Date of Electronic Publication: 2015 Sep 14.Publisher: Nature America Publishing Country of Publication: United States NLM ID: 9604648 Publication Model: Print-Electronic

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Academic Journal

Systems strategies for developing industrial microbial strains.

  • Authors : Lee SY; Metabolic and Biomolecular Engineering National Research Laboratory, Department of Chemical and Biomolecular Engineering (BK21 Plus Program), Center for Systems and Synthetic Biotechnology, Institute for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, Republic of Korea.; BioInformatics Research Center, KAIST, Daejeon, Republic of Korea.

Subjects: Models, Genetic*; Bacteria/Bacteria/Bacteria/*genetics ; Bacterial Proteins/Bacterial Proteins/Bacterial Proteins/*genetics

  • Source: Nature biotechnology [Nat Biotechnol] 2015 Oct; Vol. 33 (10), pp. 1061-72.Publisher: Nature America Publishing Country of Publication: United States NLM ID: 9604648 Publication Model: Print Cited

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Academic Journal

ConStrains identifies microbial strains in metagenomic datasets.

  • Authors : Luo C; Broad Institute of Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, Massachusetts, USA.; Gastrointestinal Unit and Center for the Study of Inflammatory Bowel Disease, Massachusetts General Hospital and Harvard Medical School, Boston, Massachusetts, USA.

Subjects: Algorithms*; Bacteria/Bacteria/Bacteria/*genetics ; Genome, Bacterial/Genome, Bacterial/Genome, Bacterial/*genetics

  • Source: Nature biotechnology [Nat Biotechnol] 2015 Oct; Vol. 33 (10), pp. 1045-52. Date of Electronic Publication: 2015 Sep 07.Publisher: Nature America Publishing Country of Publication: United States NLM ID: 9604648 Publication Model: Print-Electronic

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Academic Journal

A catalog of the mouse gut metagenome.

  • Authors : Xiao L; Beijing Genomics Institute (BGI)-Shenzhen, Shenzhen, China.; Feng Q

Subjects: Databases, Genetic*; Bacteria/Bacteria/Bacteria/*genetics ; Chromosome Mapping/Chromosome Mapping/Chromosome Mapping/*methods

  • Source: Nature biotechnology [Nat Biotechnol] 2015 Oct; Vol. 33 (10), pp. 1103-8. Date of Electronic Publication: 2015 Sep 28.Publisher: Nature America Publishing Country of Publication: United States NLM ID: 9604648 Publication Model: Print-Electronic

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Academic Journal

Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes.

  • Authors : Albertsen M; Department of Biotechnology, Chemistry and Environmental Engineering, Aalborg University, Aalborg, Denmark.; Hugenholtz P

Subjects: Genome, Bacterial* ; Metagenome*; Bacteria/Bacteria/Bacteria/*classification

  • Source: Nature biotechnology [Nat Biotechnol] 2013 Jun; Vol. 31 (6), pp. 533-8. Date of Electronic Publication: 2013 May 26.Publisher: Nature America Publishing Country of Publication: United States NLM ID: 9604648 Publication Model: Print-Electronic

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Academic Journal

Efficient de novo assembly of single-cell bacterial genomes from short-read data sets.

Subjects: Databases, Nucleic Acid*; Bacteria/Bacteria/Bacteria/*cytology ; Bacteria/Bacteria/Bacteria/*genetics

  • Source: Nature biotechnology [Nat Biotechnol] 2011 Sep 18; Vol. 29 (10), pp. 915-21. Date of Electronic Publication: 2011 Sep 18.Publisher: Nature America Publishing Country of Publication: United States NLM ID: 9604648 Publication Model: Electronic

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Academic Journal

High-throughput generation, optimization and analysis of genome-scale metabolic models.

  • Authors : Henry CS; Mathematics and Computer Science Division, Argonne National Laboratory, Argonne, Illinois, USA. ; DeJongh M

Subjects: Models, Biological*; Bacteria/Bacteria/Bacteria/*genetics ; Bacteria/Bacteria/Bacteria/*metabolism

  • Source: Nature biotechnology [Nat Biotechnol] 2010 Sep; Vol. 28 (9), pp. 977-82. Date of Electronic Publication: 2010 Aug 29.Publisher: Nature America Publishing Country of Publication: United States NLM ID: 9604648 Publication Model: Print-Electronic

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Academic Journal

High-resolution metagenomics targets specific functional types in complex microbial communities.

  • Authors : Kalyuzhnaya MG; Department of Microbiology, University of Washington, Benjamin Hall IRB, 616 NE Northlake Place, Seattle, Washington 98105, USA.; Lapidus A

Subjects: Microbiology*; Bacteria/Bacteria/Bacteria/*cytology ; Genomics/Genomics/Genomics/*methods

  • Source: Nature biotechnology [Nat Biotechnol] 2008 Sep; Vol. 26 (9), pp. 1029-34.Publisher: Nature America Publishing Country of Publication: United States NLM ID: 9604648 Publication Model: Print Cited

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Periodical

Dissecting microbial employment.

Subjects: Microbiology*; Bacteria/Bacteria/Bacteria/*cytology ; Nucleic Acid Amplification Techniques/Nucleic Acid Amplification Techniques/Nucleic Acid Amplification Techniques/*methods

  • Source: Nature biotechnology [Nat Biotechnol] 2008 Sep; Vol. 26 (9), pp. 997-8.Publisher: Nature America Publishing Country of Publication: United States NLM ID: 9604648 Publication Model: Print Cited

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Editorial & Opinion

Genomic databases yield novel bioplastic producers.

Subjects: Databases, Nucleic Acid*; Bacteria/Bacteria/Bacteria/*genetics ; Bacteria/Bacteria/Bacteria/*metabolism

  • Source: Nature biotechnology [Nat Biotechnol] 2003 Aug; Vol. 21 (8), pp. 845-6.Publisher: Nature America Publishing Country of Publication: United States NLM ID: 9604648 Publication Model: Print Cited

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