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Academic Journal

Fast and Accurate Maximum-Likelihood Estimation of Multi-Type Birth–Death Epidemiological Models from Phylogenetic Trees

Authors : Zhukova, Anna; Hecht, Frédéric; Maday, Yvon ...

Subjects: Birth-Death models; Ebola; Epidemiology

Source: ISSN: 1063-5157.

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Academic Journal

Robustness of Felsenstein’s Versus Transfer Bootstrap Supports With Respect to Taxon Sampling

Authors : Zaharias, Paul; Lemoine, Frédéric; Gascuel, Olivier ...

Subjects: Felsenstein’s bootstrap; phylogenetic trees; support robustness

Source: ISSN: 1063-5157.

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Academic Journal

Sharp, strong, and unique minimizers for low complexity robust recovery

Authors : Fadili, Jalal M.; Tran T. A., Nghia; Trinh T. T., Tran ...

Subjects: [MATH.MATH-OC]Mathematics [math]/Optimization and Control [math.OC]; [INFO]Computer Science [cs]

Source: ISSN: 2049-8764.

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Academic Journal

Distributional finite-difference modeling of seismic waves

Authors : Masson, Yder;

Subjects: Numerical modelling; Computational seismology; Wave propagation

Source: ISSN: 0956-540X.

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Academic Journal

Nonlinear dimension reduction for surrogate modeling using gradient information

Authors : Bigoni, Daniele; Marzouk, Youssef; Prieur, Clémentine ...

Subjects: high-dimensional approximation; nonlinear dimension reduction; feature map

Source: ISSN: 2049-8764.

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Academic Journal

Solving Block Low-Rank Linear Systems by LU Factorization is Numerically Stable

Authors : Higham, Nicholas, J; Mary, Théo;

Subjects: Block low-rank matrices; rounding error analysis; floating-point arithmetic

Source: ISSN: 0272-4979.

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Academic Journal

Positive multistate protein design

Authors : Vucinic, Jelena; Simoncini, David; Ruffini, Manon ...

Subjects: [MATH]Mathematics [math]; [INFO]Computer Science [cs]; [SDV]Life Sciences [q-bio]

Source: ISSN: 1367-4803.

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Analysis of a logical regulatory network reveals how Fe-S cluster biogenesis is controlled in the face of stress

Authors : Firas Hammami; Laurent Tichit; Béatrice Py ...

Subjects: regulatory networks; logical modeling; bacterial regulation

Source: microLifemicroLife, 2023, 4, ⟨10.1093/femsml/uqad003⟩

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Academic Journal

BrAPI - an Application Programming Interface for Plant Breeding Applications.

Authors : Abbeloos, Rafael; Backlund, Jan Erik; Basterrechea Salido, Martin ...

Subjects: [SDV]Life Sciences [q-bio]; [SDV.BV]Life Sciences [q-bio]/Vegetal Biology; [MATH]Mathematics [math]

Source: ISSN: 1367-4803.

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Academic Journal

ASICS: an R package for a whole analysis workflow of 1D 1H NMR spectra

Authors : Lefort, Gaëlle; Liaubet, Laurence; Canlet, Cécile ...

Subjects: [MATH]Mathematics [math]; [INFO]Computer Science [cs]; [SDV]Life Sciences [q-bio]

Source: ISSN: 1367-4803.

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Academic Journal

FROGS: Find, Rapidly, OTUs with Galaxy Solution

Authors : Escudié, Frédéric; Auer, Lucas; Bernard, Maria ...

Subjects: RNA gene database; sequencing data; rare biosphere

Source: ISSN: 1367-4803.

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Academic Journal

How evolution of genomes is reflected in exact DNA sequence match statistics

Authors : Massip, Florian; Sheinman, Michael; Schbath, Sophie ...

Subjects: sequence similarities; comparative genomics; genome evolution

Source: ISSN: 0737-4038.

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Academic Journal

Next-generation annotation of prokaryotic genomes with EuGene-P: application to Sinorhizobium meliloti 2011

Authors : Sallet, Erika; Roux, Brice; Sauviac, Laurent ...

Subjects: genome annotation; rhizobium; prokaryote

Source: ISSN: 1340-2838 ; DNA Research ; https://hal.inrae.fr/hal-02644625 ; DNA Research, Oxford University Press (OUP), 2013, 20 (4), pp.339-353.

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Academic Journal

Taxon influence index: assessing taxon-induced incongruities in phylogenetic inference

Authors : Mariadassou, Mahendra; Bar-Hen, Avner; Kishino, Hirohisa ...

Subjects: bootstrap support; taxon sampling; tree robustness

Source: ISSN: 1063-5157.

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Academic Journal

Time lines of infection and disease in human influenza: a review of volunteer challenge studies

Authors : Carrat, Fabrice; Vergu, Elisabeta; Ferguson, Neil M. ...

Subjects: INFLUENZA HUMAN; SIGN AND SYMPTOM; VIRUS SHEDDING

Source: ISSN: 0002-9262.

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Academic Journal

A mortar spectral element method for 3D Maxwell's equations

Authors : Boulmezaoud, Tahar, Z; El Rhabi, Mohammed;

Subjects: Maxwell's equations; mortar method; spectral elements

Source: ISSN: 0272-4979.

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Evolutionary Origins of Rhizarian Parasites

Authors : Jan Pawlowski; Christophe Klopp; Silvia J. Cañas-Duarte ...

Subjects: 0301 basic medicine; Zoology; parasites

Source: Molecular Biology and EvolutionMolecular Biology and Evolution, Oxford University Press (OUP), 2016, 33 (4), pp.980-983. ⟨10.1093/molbev/msv340⟩Molecular

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Genome-wide identification of genes directly regulated by the pleiotropic transcription factor Spx in Bacillus subtilis

Authors : Olivier Delumeau; Philippe Noirot; Pierre Nicolas ...

Subjects: C-terminal domain, RNA-polymerase; Transcription, Genetic; [SDV]Life Sciences [q-bio]

Source: Nucleic Acids ResearchNucleic Acids Research, Oxford University Press, 2012, 40 (19), pp.9571-9583. ⟨10.1093/nar/gks755⟩Nucleic Acids Research 19 (40), 9571-9583. (2012)

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Tedna: a transposable element de novo assembler

Authors : Matthias Zytnicki; Eduard Akhunov; Hadi Quesneville ...

Subjects: Statistics and Probability; Transposable element; Computer science

Source: BioinformaticsBioinformatics, Oxford University Press (OUP), 2014, (on-line), pp.1-3. ⟨10.1093/bioinformatics/btu365⟩

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EuGene-PP: a next-generation automated annotation pipeline for prokaryotic genomes

Authors : Jérôme Gouzy; Erika Sallet; Thomas Schiex ...

Subjects: 0106 biological sciences; Statistics and Probability; Computer science

Source: BioinformaticsBioinformatics, Oxford University Press (OUP), 2014, 30 (18), pp.2659-2661. ⟨10.1093/bioinformatics/btu366⟩

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MCQTL: multi-allelic QTL mapping in multi-cross design

Authors : Marie-Françoise Jourjon; Jacques Marcel; Sylvain Jasson ...

Subjects: 0106 biological sciences; Statistics and Probability; Genotype

Source: BioinformaticsBioinformatics, Oxford University Press (OUP), 2005, 21 (1), pp.128-130

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CARHTA GENE: multipopulation integrated genetic and radiation hybrid mapping

Authors : Martin Bouchez; Denis Milan; Thomas Schiex ...

Subjects: 0106 biological sciences; Statistics and Probability; computer.internet_protocol

Source: BioinformaticsBioinformatics, Oxford University Press (OUP), 2005, 21 (5), pp.1703-1704. ⟨10.1093/bioinformatics/bti222⟩

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