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Academic Journal

rawMSA: End-to-end Deep Learning using raw Multiple Sequence Alignments.

Authors : Mirabello, Claudio¹; Wallner, Björn¹

Subjects: *SEQUENCE alignment; *AMINO acid sequence; *NATURAL language processing

Source: PLoS ONE. 8/14/2019, Vol. 14 Issue 8, p1-15. 15p.

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Academic Journal

Prediction of disease-associated mutations in the transmembrane regions of proteins with known 3D structure.

Authors : Popov, Petr^1,2; Bizin, Ilya³; Gromiha, Michael⁴

Subjects: *MEMBRANE proteins; *WEB servers; *REGRESSION trees

Source: PLoS ONE. 7/10/2019, Vol. 14 Issue 7, p1-13. 13p.

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Academic Journal

Mutplot: An easy-to-use online tool for plotting complex mutation data with flexibility.

Authors : Zhang, Weiwei¹ ; Wang, Cheng¹; Zhang, Xuan¹

Subjects: *WEB servers; *WEB-based user interfaces; *COMPUTER architecture

Source: PLoS ONE. 5/15/2019, Vol. 14 Issue 5, p1-7. 7p.

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Academic Journal

Sequence Based Prediction of Antioxidant Proteins Using a Classifier Selection Strategy.

Authors : Zhang, Lina¹; Zhang, Chengjin^1,2 ; Gao, Rui¹

Subjects: *ANTIOXIDANTS; *AMINO acid sequence; *PROTEIN structure

Source: PLoS ONE. 9/23/2016, Vol. 11 Issue 9, p1-21. 21p.

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Academic Journal

Engineering Proteins for Thermostability with iRDP Web Server.

Authors : Panigrahi, Priyabrata¹; Sule, Manas¹; Ghanate, Avinash²

Subjects: *PROTEIN engineering; *PROTEIN structure; *PROTEIN stability

Source: PLoS ONE. 10/5/2015, Vol. 10 Issue 10, p1-20. 20p.

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Academic Journal

Inferring protein fitness landscapes from laboratory evolution experiments.

Authors : D'Costa, Sameer; Hinds, Emily C.; Freschlin, Chase R.

Subjects: TETRAHYDROFOLATE dehydrogenase; AMINO acid sequence; SUPERVISED learning

Source: PLoS Computational Biology; 3/1/2023, Vol. 19 Issue 3, p1-21, 21p, 3 Diagrams, 1 Graph

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Academic Journal

Predicting the functional impact of KCNQ1 variants with artificial neural networks.

Authors : Phul, Saksham; Kuenze, Georg; Vanoye, Carlos G.

Subjects: ARTIFICIAL neural networks; WEB servers; PROTEIN structure

Source: PLoS Computational Biology; 4/20/2022, Vol. 18 Issue 4, p1-21, 21p, 1 Diagram, 1 Chart, 4 Graphs

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Academic Journal

Mining folded proteomes in the era of accurate structure prediction.

Authors : Bayly-Jones, Charles; Whisstock, James C.

Subjects: PROTEIN structure; ARTIFICIAL intelligence; BIOLOGICAL systems

Source: PLoS Computational Biology; 3/25/2022, Vol. 18 Issue 3, p1-10, 10p, 3 Diagrams

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Academic Journal

Fast protein structure comparison through effective representation learning with contrastive graph neural networks.

Authors : Xia, Chunqiu; Feng, Shi-Hao; Xia, Ying

Subjects: PROTEIN structure; WEB servers; REPRESENTATIONS of graphs

Source: PLoS Computational Biology; 3/24/2022, Vol. 18 Issue 3, p1-21, 21p, 4 Charts, 7 Graphs

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Academic Journal

PremPS: Predicting the impact of missense mutations on protein stability.

Authors : Chen, Yuting; Lu, Haoyu; Zhang, Ning

Subjects: MISSENSE mutation; PROTEIN structure; PROTEIN engineering

Source: PLoS Computational Biology; 12/30/2020, Vol. 16 Issue 12, p1-22, 22p, 1 Diagram, 4 Charts, 2 Graphs

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