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Academic Journal

cONcat: Computational reconstruction of concatenated fragments from long Oxford Nanopore reads.

  • Authors : Petri AJ; Department of Mathematics, Science for Life Laboratory, Stockholm University, Stockholm, Sweden.; Department of Computer Science, University of Helsinki, Helsinki, Finland.

Subjects: Algorithms* ; High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/methods ; Computational Biology*/Computational Biology*/Computational Biology*/methods

  • Source: PloS one [PLoS One] 2025 Jul 24; Vol. 20 (7), pp. e0321246. Date of Electronic Publication: 2025 Jul 24 (Print Publication: 2025).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection

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Academic Journal

Next-Generation Sequencing (NGS) in non-small cell lung carcinoma: A real-world experience in the public health system of Galicia (Northwest Spain).

  • Authors : Abdulkader-Nallib I; Department of Pathology, Clinical University Hospital of Santiago de Compostela, Health Research Institute of Santiago de Compostela, Galician Healthcare Service (SERGAS), Santiago de Compostela, Spain.; School of Medicine, University of Santiago de Compostela, Santiago de Compostela, Spain.

Subjects: Carcinoma, Non-Small-Cell Lung*/Carcinoma, Non-Small-Cell Lung*/Carcinoma, Non-Small-Cell Lung*/genetics ; Carcinoma, Non-Small-Cell Lung*/Carcinoma, Non-Small-Cell Lung*/Carcinoma, Non-Small-Cell Lung*/pathology ; High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/methods

  • Source: PloS one [PLoS One] 2025 Jul 01; Vol. 20 (7), pp. e0326336. Date of Electronic Publication: 2025 Jul 01 (Print Publication: 2025).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection

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Academic Journal

Cost-effective solutions for high-throughput enzymatic DNA methylation sequencing.

Subjects: DNA Methylation*/DNA Methylation*/DNA Methylation*/genetics ; High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/economics ; High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/methods

  • Source: PLoS genetics [PLoS Genet] 2025 May 22; Vol. 21 (5), pp. e1011667. Date of Electronic Publication: 2025 May 22 (Print Publication: 2025).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101239074 Publication Model: eCollection

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Academic Journal

TBpore cluster: A novel phylogenetic pipeline for tuberculosis transmission studies using nanopore next-generation sequencing data.

  • Authors : Gagnon S; Immunopathology Axis, Centre de Recherche du Centre Hospitalier de l'Université de Montréal, Montréal, Québec, Canada.; Department of Microbiology, Infectious Diseases and Immunology, Université de Montréal, Montréal, Québec, Canada.

Subjects: Mycobacterium tuberculosis*/Mycobacterium tuberculosis*/Mycobacterium tuberculosis*/genetics ; Mycobacterium tuberculosis*/Mycobacterium tuberculosis*/Mycobacterium tuberculosis*/classification ; Mycobacterium tuberculosis*/Mycobacterium tuberculosis*/Mycobacterium tuberculosis*/isolation & purification

  • Source: PloS one [PLoS One] 2025 Jun 16; Vol. 20 (6), pp. e0325914. Date of Electronic Publication: 2025 Jun 16 (Print Publication: 2025).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection

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Academic Journal

Evaluation of metatranscriptomic sequencing protocols to obtain full-length RNA virus genomes from mammalian tissues.

  • Authors : Li Y; Department of Microbiology, Immunology and Transplantation, KU Leuven, Rega Institute, KU Leuven, Leuven, Belgium.; Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, PR China.

Subjects: Genome, Viral*/Genome, Viral*/Genome, Viral*/genetics ; High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/methods ; RNA, Viral*/RNA, Viral*/RNA, Viral*/genetics

  • Source: PloS one [PLoS One] 2025 May 30; Vol. 20 (5), pp. e0324537. Date of Electronic Publication: 2025 May 30 (Print Publication: 2025).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection

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Academic Journal

Nanopore-based targeted next-generation sequencing (tNGS): A versatile technology specialized in detecting low bacterial load clinical specimens.

  • Authors : Yang C; Department of Tuberculosis, The School of Public Health of Nanjing Medical University, The Second Hospital of Nanjing, Nanjing, China.; Gao W

Subjects: Mycobacterium tuberculosis*/Mycobacterium tuberculosis*/Mycobacterium tuberculosis*/genetics ; Mycobacterium tuberculosis*/Mycobacterium tuberculosis*/Mycobacterium tuberculosis*/isolation & purification ; High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/methods

  • Source: PloS one [PLoS One] 2025 May 27; Vol. 20 (5), pp. e0324003. Date of Electronic Publication: 2025 May 27 (Print Publication: 2025).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection

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Academic Journal

High-performance protocol for ultra-short DNA sequencing using Oxford Nanopore Technology (ONT).

Subjects: Sequence Analysis, DNA*/Sequence Analysis, DNA*/Sequence Analysis, DNA*/methods ; Nanopores* ; High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/methods

  • Source: PloS one [PLoS One] 2025 Apr 29; Vol. 20 (4), pp. e0318040. Date of Electronic Publication: 2025 Apr 29 (Print Publication: 2025).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection

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Academic Journal

Error-corrected ultradeep next-generation sequencing for detection of clonal haematopoiesis and haematological neoplasms - sensitivity, specificity and accuracy.

  • Authors : Tursky ML; Blood, Stem Cell, and Cancer Research Programme, St Vincent's Centre for Applied Medical Research and Department of Haematology, St Vincent's Hospital, Sydney, Australia.; School of Clinical Medicine, St Vincent's Healthcare Clinical Campus, Faculty of Medicine and Health, UNSW Sydney, Kensington, Australia.

Subjects: Hematologic Neoplasms*/Hematologic Neoplasms*/Hematologic Neoplasms*/genetics ; Hematologic Neoplasms*/Hematologic Neoplasms*/Hematologic Neoplasms*/diagnosis ; High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/methods

  • Source: PloS one [PLoS One] 2025 Feb 26; Vol. 20 (2), pp. e0318300. Date of Electronic Publication: 2025 Feb 26 (Print Publication: 2025).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection

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Academic Journal

Accuracy of next-generation sequencing for rapid diagnosis of tuberculous pleurisy: A protocol of systematic review and meta-analysis.

  • Authors : Ling Y; The Second School of Clinical Medicine, Zhejiang Chinese Medical University, Hangzhou, Zhejiang, China.; Shen Y

Subjects: Tuberculosis, Pleural*/Tuberculosis, Pleural*/Tuberculosis, Pleural*/diagnosis ; Tuberculosis, Pleural*/Tuberculosis, Pleural*/Tuberculosis, Pleural*/genetics ; High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/methods

  • Source: PloS one [PLoS One] 2025 Feb 25; Vol. 20 (2), pp. e0319175. Date of Electronic Publication: 2025 Feb 25 (Print Publication: 2025).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection

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Academic Journal

Fast and accurate imputation of genotypes from noisy low-coverage sequencing data in bi-parental populations.

  • Authors : Triay C; DIADE, IRD, Cirad, University of Montpellier, Montpellier, France.; Boizet A

Subjects: High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/methods ; Genotype*; Algorithms

  • Source: PloS one [PLoS One] 2025 Jan 30; Vol. 20 (1), pp. e0314759. Date of Electronic Publication: 2025 Jan 30 (Print Publication: 2025).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection

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  • 1-10 of  3,478 results for ""High-Throughput Nucleotide Sequencing""