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Academic Journal

Differential expression analysis with inmoose, the integrated multi-omic open-source environment in Python.

Subjects: Software* ; Gene Expression Profiling*/Gene Expression Profiling*/Gene Expression Profiling*/methods ; Computational Biology*/Computational Biology*/Computational Biology*/methods

  • Source: BMC bioinformatics [BMC Bioinformatics] 2025 Jun 23; Vol. 26 (1), pp. 160. Date of Electronic Publication: 2025 Jun 23.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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Academic Journal

Integrated multi-sample transcriptomic analysis of COVID-19 patients against controls using a bioinformatics pipeline.

  • Authors : Khoo LY; Data Science and Bioinformatics Laboratory, Institute of Biological Sciences, Faculty of Science, Universiti of Malaya, Lembah Pantai, 50603, Kuala Lumpur, Malaysia.; Dhillon SK

Subjects: COVID-19*/COVID-19*/COVID-19*/genetics ; COVID-19*/COVID-19*/COVID-19*/immunology ; Computational Biology*/Computational Biology*/Computational Biology*/methods

  • Source: Scientific reports [Sci Rep] 2025 Jun 04; Vol. 15 (1), pp. 19644. Date of Electronic Publication: 2025 Jun 04.Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN:

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Academic Journal

CorrAdjust unveils biologically relevant transcriptomic correlations by efficiently eliminating hidden confounders.

  • Authors : Nersisyan S; Computational Medicine Center, Thomas Jefferson University, Philadelphia, PA 19107, United States.; Loher P

Subjects: Software* ; Transcriptome* ; Gene Expression Profiling*/Gene Expression Profiling*/Gene Expression Profiling*/methods

  • Source: Nucleic acids research [Nucleic Acids Res] 2025 May 22; Vol. 53 (10).Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

RNAcare: integrating clinical data with transcriptomic evidence using rheumatoid arthritis as a case study.

  • Authors : Tang M; School of Infection & Immunity, University of Glasgow, Glasgow, UK.; Haese-Hill W

Subjects: Arthritis, Rheumatoid*/Arthritis, Rheumatoid*/Arthritis, Rheumatoid*/genetics ; Arthritis, Rheumatoid*/Arthritis, Rheumatoid*/Arthritis, Rheumatoid*/pathology ; Transcriptome*

  • Source: BMC medical genomics [BMC Med Genomics] 2025 May 21; Vol. 18 (1), pp. 93. Date of Electronic Publication: 2025 May 21.Publisher: BioMed Central Country of Publication: England NLM ID: 101319628 Publication Model: Electronic Cited Medium: Internet ISSN: 1755-8794

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Academic Journal

lute: estimating the cell composition of heterogeneous tissue with varying cell sizes using gene expression.

  • Authors : Maden SK; Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, USA.; Huuki-Myers LA

Subjects: Software* ; Cell Size* ; Gene Expression Profiling*/Gene Expression Profiling*/Gene Expression Profiling*/methods

  • Source: BMC genomics [BMC Genomics] 2025 May 01; Vol. 26 (1), pp. 433. Date of Electronic Publication: 2025 May 01.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164

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Academic Journal

Integrating multiple spatial transcriptomics data using community-enhanced graph contrastive learning.

  • Authors : Tu W; School of Artificial Intelligence, School of Computer Science, Wuhan University, Wuhan, China.; Zhang L

Subjects: Computational Biology*/Computational Biology*/Computational Biology*/methods ; Gene Expression Profiling*/Gene Expression Profiling*/Gene Expression Profiling*/methods ; Gene Expression Profiling*/Gene Expression Profiling*/Gene Expression Profiling*/statistics & numerical data

  • Source: PLoS computational biology [PLoS Comput Biol] 2025 Apr 03; Vol. 21 (4), pp. e1012948. Date of Electronic Publication: 2025 Apr 03 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

Redefining the high variable genes by optimized LOESS regression with positive ratio.

  • Authors : Xie Y; College of Life Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China.; BGI Research, Shenzhen, 518083, China.

Subjects: Algorithms* ; Single-Cell Analysis*/Single-Cell Analysis*/Single-Cell Analysis*/methods ; Sequence Analysis, RNA*/Sequence Analysis, RNA*/Sequence Analysis, RNA*/methods

  • Source: BMC bioinformatics [BMC Bioinformatics] 2025 Apr 15; Vol. 26 (1), pp. 104. Date of Electronic Publication: 2025 Apr 15.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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Academic Journal

Improving data interpretability with new differential sample variance gene set tests.

  • Authors : Rahmatallah Y; Department of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, 72205, USA. .; Glazko G

Subjects: Gene Expression Profiling*/Gene Expression Profiling*/Gene Expression Profiling*/methods ; Computational Biology*/Computational Biology*/Computational Biology*/methods; Humans

  • Source: BMC bioinformatics [BMC Bioinformatics] 2025 Apr 14; Vol. 26 (1), pp. 103. Date of Electronic Publication: 2025 Apr 14.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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Academic Journal

Efficient and easy gene expression and genetic variation data analysis and visualization using exvar.

  • Authors : Ben Aribi H; Faculty of Sciences of Tunis, University of Tunis El Manar, Tunis, Tunisia. .; Dixon I

Subjects: Genetic Variation* ; Software* ; Gene Expression Profiling*/Gene Expression Profiling*/Gene Expression Profiling*/methods

  • Source: Scientific reports [Sci Rep] 2025 Apr 10; Vol. 15 (1), pp. 12264. Date of Electronic Publication: 2025 Apr 10.Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN:

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Academic Journal

Benchmarking computational methods for detecting spatial domains and domain-specific spatially variable genes from spatial transcriptomics data.

  • Authors : Kang L; Department of Hematology, Children's Hospital of Soochow University, Suzhou 215000, China.; Cancer Institute, Suzhou Medical College, Soochow University, Suzhou 215000, China.

Subjects: Gene Expression Profiling*/Gene Expression Profiling*/Gene Expression Profiling*/methods ; Transcriptome* ; Computational Biology*/Computational Biology*/Computational Biology*/methods

  • Source: Nucleic acids research [Nucleic Acids Res] 2025 Apr 10; Vol. 53 (7).Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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  • 1-10 of  16,394 results for ""Gene Expression Profiling""