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Academic Journal

MVHGCN: Predicting circRNA-disease associations with multi-view heterogeneous graph convolutional neural networks.

  • Authors : Miao Y; College of Computer and Control Engineering, Northeast Forestry University, Harbin, China.; Tang X

Subjects: RNA, Circular*/RNA, Circular*/RNA, Circular*/genetics ; Neural Networks, Computer* ; Computational Biology*/Computational Biology*/Computational Biology*/methods

  • Source: PLoS computational biology [PLoS Comput Biol] 2025 Jun 19; Vol. 21 (6), pp. e1013225. Date of Electronic Publication: 2025 Jun 19 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

GNNMutation: a heterogeneous graph-based framework for cancer detection.

Subjects: Mutation* ; Neoplasms*/Neoplasms*/Neoplasms*/genetics ; Neoplasms*/Neoplasms*/Neoplasms*/diagnosis

  • Source: BMC bioinformatics [BMC Bioinformatics] 2025 Jun 04; Vol. 26 (1), pp. 153. Date of Electronic Publication: 2025 Jun 04.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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Academic Journal

LGLoc as a new language model-driven graph neural network for mRNA localization.

  • Authors : Akbari Rokn Abadi S; Division of Computational Science and Technology, School of Electrical Engineering and Computer Science (EECS), KTH Royal Institute of Technology, Stockholm, Sweden.; Shahbakhsh A

Subjects: RNA, Messenger*/RNA, Messenger*/RNA, Messenger*/metabolism ; RNA, Messenger*/RNA, Messenger*/RNA, Messenger*/genetics ; RNA, Messenger*/RNA, Messenger*/RNA, Messenger*/chemistry

  • Source: Scientific reports [Sci Rep] 2025 May 28; Vol. 15 (1), pp. 18709. Date of Electronic Publication: 2025 May 28.Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN:

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Academic Journal

GNNs and ensemble models enhance the prediction of new sRNA-mRNA interactions in unseen conditions.

  • Authors : Cohen S; Department of Software & Information Systems Engineering, Faculty of Engineering, Ben-Gurion University of the Negev, 8410501, Beer-Sheva, Israel.; Rokach L

Subjects: RNA, Messenger*/RNA, Messenger*/RNA, Messenger*/metabolism ; RNA, Messenger*/RNA, Messenger*/RNA, Messenger*/genetics ; RNA, Bacterial*/RNA, Bacterial*/RNA, Bacterial*/metabolism

  • Source: BMC bioinformatics [BMC Bioinformatics] 2025 May 21; Vol. 26 (1), pp. 131. Date of Electronic Publication: 2025 May 21.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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Academic Journal

iProtDNA-SMOTE: Enhancing protein-DNA binding sites prediction through imbalanced graph neural networks.

  • Authors : Huang R; School of Information Engineering, Jingdezhen Ceramic University, Jingdezhen Jiangxi, China.; Qiu W

Subjects: Neural Networks, Computer* ; DNA*/DNA*/DNA*/metabolism ; DNA*/DNA*/DNA*/chemistry

  • Source: PloS one [PLoS One] 2025 May 13; Vol. 20 (5), pp. e0320817. Date of Electronic Publication: 2025 May 13 (Print Publication: 2025).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

iPiDA-LGE: a local and global graph ensemble learning framework for identifying piRNA-disease associations.

  • Authors : Wei H; School of Computer Science and Technology, Xidian University, Xi'an, Shaanxi, 710126, China. .; Hou J

Subjects: RNA, Small Interfering*/RNA, Small Interfering*/RNA, Small Interfering*/genetics ; Computational Biology*/Computational Biology*/Computational Biology*/methods ; Neural Networks, Computer*

  • Source: BMC biology [BMC Biol] 2025 May 09; Vol. 23 (1), pp. 119. Date of Electronic Publication: 2025 May 09.Publisher: BioMed Central Country of Publication: England NLM ID: 101190720 Publication Model: Electronic Cited Medium: Internet ISSN: 1741-7007

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Academic Journal

Effective integration of multi-omics with prior knowledge to identify biomarkers via explainable graph neural networks.

  • Authors : Tripathy RK; The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA.; Frohock Z

Subjects: Neural Networks, Computer* ; Biomarkers*/Biomarkers*/Biomarkers*/metabolism ; Proteomics*/Proteomics*/Proteomics*/methods

  • Source: NPJ systems biology and applications [NPJ Syst Biol Appl] 2025 May 08; Vol. 11 (1), pp. 43. Date of Electronic Publication: 2025 May 08.Publisher: Nature Publishing Group in partnership with SBI, The Systems Biology Institute Country of Publication: England NLM ID: 101677786 Publication Model:

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Academic Journal

A KAN-based hybrid deep neural networks for accurate identification of transcription factor binding sites.

  • Authors : He G; School of Information Engineering, Wenzhou Business College, Wenzhou, Zhejiang, PR China.; Ye J

Subjects: Transcription Factors*/Transcription Factors*/Transcription Factors*/metabolism ; Neural Networks, Computer* ; Computational Biology*/Computational Biology*/Computational Biology*/methods

  • Source: PloS one [PLoS One] 2025 May 07; Vol. 20 (5), pp. e0322978. Date of Electronic Publication: 2025 May 07 (Print Publication: 2025).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

A new strategy for Cas protein recognition based on graph neural networks and SMILES encoding.

  • Authors : Chen G; Zhejiang Laboratory, Research Center for Life Sciences Computing, Hangzhou, 311100, China. .; Hou L

Subjects: Neural Networks, Computer* ; CRISPR-Cas Systems* ; CRISPR-Associated Proteins*/CRISPR-Associated Proteins*/CRISPR-Associated Proteins*/chemistry

  • Source: Scientific reports [Sci Rep] 2025 Apr 30; Vol. 15 (1), pp. 15236. Date of Electronic Publication: 2025 Apr 30.Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN:

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Academic Journal

CGLoop: a neural network framework for chromatin loop prediction.

  • Authors : Wang J; School of Software, Henan Polytechnic University, Jiaozuo, 454003, China.; Wu L

Subjects: Chromatin*/Chromatin*/Chromatin*/chemistry ; Chromatin*/Chromatin*/Chromatin*/genetics ; Neural Networks, Computer*

  • Source: BMC genomics [BMC Genomics] 2025 Apr 05; Vol. 26 (1), pp. 342. Date of Electronic Publication: 2025 Apr 05.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164

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  • 1-10 of  1,908 results for ""Neural Networks, Computer""