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MVP: a modular viromics pipeline to identify, filter, cluster, annotate, and bin viruses from metagenomes

• Authors : Coclet, Clément; Camargo, Antonio Pedro; Roux, Simon

Subjects: Biological Sciences; Bioinformatics and Computational Biology; Genetics

• Source: mSystems. 9(10)

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Decomposing a San Francisco estuary microbiome using long-read metagenomics reveals species- and strain-level dominance from picoeukaryotes to viruses

• Authors : Lui, Lauren M; Nielsen, Torben N

Subjects: Climate Change Impacts and Adaptation; Biological Sciences; Ecology

• Source: mSystems. 9(9)

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Study of Endogenous Viruses in the Strawberry Plants.

• Authors : Wang, Zongneng¹ (AUTHOR) ; Liu, Jian¹ (AUTHOR) ; Qi, Xingyang¹ (AUTHOR)

Subjects: *Viral genomes; *Eukaryotic genomes; *Plant viruses

• Source: Viruses (1999-4915). Aug2024, Vol. 16 Issue 8, p1306. 17p.

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Fast and accurate identification of plasmids and viruses in sequencing data using geNomad

• Authors : Camargo, Antonio Pedro; Kyrpides, Nikos C

Subjects: Microbiology; Biological Sciences; Networking and Information Technology R&D (NITRD)

• Source: Nature Biotechnology. 42(8)

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Novel Z-DNA binding domains in giant viruses

• Authors : Romero, Miguel F; Krall, Jeffrey B; Nichols, Parker J

Subjects: Biochemistry and Cell Biology; Biological Sciences; Biotechnology

• Source: Journal of Biological Chemistry. 300(8)

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Microbe Profile: Bacteriophage ϕ6: a model for segmented RNA viruses and the evolutionary consequences of viral ‘sex’

• Authors : Turner, Paul E; Chao, Lin

Subjects: Microbiology; Medical Microbiology; Biomedical and Clinical Sciences

• Source: Microbiology. 170(7)

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Comparative Analysis of the Evolutionary Dynamics of Seasonal Influenza Viruses in Madagascar Before and Since the Pandemic Period of COVID‐19.

• Authors : Razanajatovo, Norosoa Harline¹ (AUTHOR) ; Randriambolamanantsoa, Tsiry Hasina¹ (AUTHOR); Randrianasolo, Laurence² (AUTHOR)

• Source: Influenza & Other Respiratory Viruses. May2025, Vol. 19 Issue 5, p1-5. 5p.

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Diversity and evolution analysis of RNA viruses in three wheat aphid species

• Authors : Ke-Hui Feng; Yu-Hua Qi; Zhuang-Xin Ye

Subjects: RNA virome; Insect-specific viruses; Endogenous viral elements

• Source: BMC Genomics, Vol 26, Iss 1, Pp 1-15 (2025)

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Complexity of Diarrhea‐Associated Viruses in Stunted Pigs Identified by Viral Metagenomics.

• Authors : Li, Qingxian^1,2 (AUTHOR); Jiang, Jianfeng^1,2 (AUTHOR); Li, Junhui³ (AUTHOR)

Subjects: *Porcine epidemic diarrhea virus; *Viral genetics; *Amino acid sequence

• Source: Transboundary & Emerging Diseases. 6/18/2025, Vol. 2025, p1-18. 18p.

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Genetic tracing of market wildlife and viruses at the epicenter of the COVID-19 pandemic

• Authors : Crits-Christoph, Alexander; Levy, Joshua I; Pekar, Jonathan E

Subjects: Biological Sciences; Coronaviruses Disparities and At-Risk Populations; Coronaviruses

• Source: Cell. 187(19)

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