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Academic Journal

GNNs and ensemble models enhance the prediction of new sRNA-mRNA interactions in unseen conditions.

  • Authors : Cohen S; Department of Software & Information Systems Engineering, Faculty of Engineering, Ben-Gurion University of the Negev, 8410501, Beer-Sheva, Israel.; Rokach L

Subjects: RNA, Messenger*/RNA, Messenger*/RNA, Messenger*/metabolism ; RNA, Messenger*/RNA, Messenger*/RNA, Messenger*/genetics ; RNA, Bacterial*/RNA, Bacterial*/RNA, Bacterial*/metabolism

  • Source: BMC bioinformatics [BMC Bioinformatics] 2025 May 21; Vol. 26 (1), pp. 131. Date of Electronic Publication: 2025 May 21.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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Academic Journal

A pathogen-specific sRNA influences enterohemorrhagic Escherichia coli fitness and virulence in part by direct interaction with the transcript encoding the ethanolamine utilization regulatory factor EutR.

  • Authors : Sauder AB; Department of Microbiology, Immunology and Cancer Biology, University of Virginia School of Medicine, Charlottesville, VA 22908, USA.; Kendall MM

Subjects: Enterohemorrhagic Escherichia coli/Enterohemorrhagic Escherichia coli/Enterohemorrhagic Escherichia coli/*genetics ; Escherichia coli Infections/Escherichia coli Infections/Escherichia coli Infections/*microbiology ; Escherichia coli Proteins/Escherichia coli Proteins/Escherichia coli Proteins/*genetics

  • Source: Nucleic acids research [Nucleic Acids Res] 2021 Nov 08; Vol. 49 (19), pp. 10988-11004.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

sRNA-mediated regulation of gal mRNA in E. coli: Involvement of transcript cleavage by RNase E together with Rho-dependent transcription termination.

  • Authors : Jeon HJ; Department of Biological Sciences, College of Biological Sciences and Biotechnology, Chungnam National University, Daejeon, Republic of Korea.; Infection Control Convergence Research Center, College of Medicine, Chungnam National University, Daejeon, Republic of Korea.

Subjects: Endoribonucleases/Endoribonucleases/Endoribonucleases/*genetics ; Escherichia coli/Escherichia coli/Escherichia coli/*genetics ; RNA, Messenger/RNA, Messenger/RNA, Messenger/*genetics

  • Source: PLoS genetics [PLoS Genet] 2021 Oct 28; Vol. 17 (10), pp. e1009878. Date of Electronic Publication: 2021 Oct 28 (Print Publication: 2021).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101239074 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

Small RNA-driven feed-forward loop: fine-tuning of protein synthesis through sRNA-mediated crosstalk.

  • Authors : Tej S; Protein Chemistry and Technology, Central Food Technological Research Institute, Mysore, Karnataka, 570 020, India.; Mukherji S

Subjects: RNA, Small Untranslated*/RNA, Small Untranslated*/RNA, Small Untranslated*/genetics ; RNA, Small Untranslated*/RNA, Small Untranslated*/RNA, Small Untranslated*/metabolism ; Protein Biosynthesis*

  • Source: The European physical journal. E, Soft matter [Eur Phys J E Soft Matter] 2021 Apr 19; Vol. 44 (4), pp. 55. Date of Electronic Publication: 2021 Apr 19.Publisher: EDP Sciences Country of Publication: France NLM ID: 101126530 Publication Model: Electronic Cited Medium: Internet ISSN: 1292-895X

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Academic Journal

Reprograming of sRNA target specificity by the leader peptide peTrpL in response to antibiotic exposure.

  • Authors : Melior H; Institute of Microbiology and Molecular Biology, University of Giessen, 35392 Giessen, Germany.; Li S

Subjects: RNA Stability*; Anti-Bacterial Agents/Anti-Bacterial Agents/Anti-Bacterial Agents/*pharmacology ; Peptides/Peptides/Peptides/*metabolism

  • Source: Nucleic acids research [Nucleic Acids Res] 2021 Mar 18; Vol. 49 (5), pp. 2894-2915.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Genome-wide sRNA and mRNA transcriptomic profiling insights into carbapenem-resistant Acinetobacter baumannii

Subjects: Acinetobacter baumannii; carbapenem resistance; Microbial Sensitivity Tests

  • Source: Front Cell Infect MicrobiolFrontiers in Cellular and Infection Microbiology, Vol 14 (2024)

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Academic Journal

Hfq-dependent mRNA unfolding promotes sRNA-based inhibition of translation.

  • Authors : Hoekzema M; Department of Cell and Molecular Biology, Biomedical Center, Uppsala University, Uppsala, Sweden.; Romilly C

Subjects: Gene Expression Regulation, Bacterial* ; Protein Biosynthesis* ; RNA Folding*

  • Source: The EMBO journal [EMBO J] 2019 Apr 01; Vol. 38 (7). Date of Electronic Publication: 2019 Mar 04.Publisher: Nature Publishing Group Country of Publication: England NLM ID: 8208664 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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Academic Journal

Mycobacterium tuberculosis 6C sRNA binds multiple mRNA targets via C-rich loops independent of RNA chaperones.

  • Authors : Mai J; Department of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada.; Rao C

Subjects: Gene Expression Regulation, Bacterial*; Bacterial Proteins/Bacterial Proteins/Bacterial Proteins/*genetics ; Carboxy-Lyases/Carboxy-Lyases/Carboxy-Lyases/*genetics

  • Source: Nucleic acids research [Nucleic Acids Res] 2019 May 07; Vol. 47 (8), pp. 4292-4307.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

sRNA-dependent control of curli biosynthesis in Escherichia coli: McaS directs endonucleolytic cleavage of csgD mRNA.

  • Authors : Andreassen PR; Department of Biochemistry and Molecular Biology, University of Southern Denmark. Campusvej 55, 5230 Odense M. Denmark.; Pettersen JS

Subjects: Escherichia coli/Escherichia coli/Escherichia coli/*genetics ; Escherichia coli Proteins/Escherichia coli Proteins/Escherichia coli Proteins/*genetics ; RNA, Messenger/RNA, Messenger/RNA, Messenger/*metabolism

  • Source: Nucleic acids research [Nucleic Acids Res] 2018 Jul 27; Vol. 46 (13), pp. 6746-6760.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

sRNARFTarget: A fast machine-learning-based approach for transcriptome-wide sRNA Target Prediction

Subjects: 0301 basic medicine; bacteria gene regulation; Information Systems not elsewhere classified

  • Source: RNA Biol

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  • 1-10 of  524 results for ""sRNA""