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  • 1-10 of  1,728 results for ""High-Throughput Nucleotide Sequencing""
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Academic Journal

HybriSeq: probe-based device-free single-cell RNA profiling.

  • Authors : Foyt D; UCSF-UC Berkeley Joint Graduate Program in Bioengineering, University of California San Francisco, San Francisco, CA, USA.; Brown D

Subjects: Single-Cell Analysis*/Single-Cell Analysis*/Single-Cell Analysis*/methods ; Sequence Analysis, RNA*/Sequence Analysis, RNA*/Sequence Analysis, RNA*/methods ; Gene Expression Profiling*/Gene Expression Profiling*/Gene Expression Profiling*/methods

  • Source: Communications biology [Commun Biol] 2025 Aug 19; Vol. 8 (1), pp. 1250. Date of Electronic Publication: 2025 Aug 19.Publisher: Nature Publishing Group UK Country of Publication: England NLM ID: 101719179 Publication Model: Electronic Cited Medium: Internet ISSN:

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Academic Journal

Generalization of the sci-L3 method to achieve high-throughput linear amplification for replication template strand sequencing, genome conformation capture, and the joint profiling of RNA and chromatin accessibility.

  • Authors : Chovanec P; Department of Human Genetics, David Geffen School of Medicine, UCLA, Los Angeles, CA 90095, United States.; Yin Y

Subjects: Chromatin*/Chromatin*/Chromatin*/genetics ; Chromatin*/Chromatin*/Chromatin*/chemistry ; Chromatin*/Chromatin*/Chromatin*/metabolism

  • Source: Nucleic acids research [Nucleic Acids Res] 2025 Feb 08; Vol. 53 (4).Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Optimizing RNA extraction methods for high-throughput transcriptome sequencing of formalin-fixed paraffin-embedded cardiac tissue specimens.

Subjects: Formaldehyde*/Formaldehyde*/Formaldehyde*/chemistry ; High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/methods ; Paraffin Embedding*/Paraffin Embedding*/Paraffin Embedding*/methods

  • Source: PloS one [PLoS One] 2024 Dec 26; Vol. 19 (12), pp. e0315098. Date of Electronic Publication: 2024 Dec 26 (Print Publication: 2024).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

DuplexDiscoverer: a computational method for the analysis of experimental duplex RNA-RNA interaction data.

  • Authors : Semenchenko E; Laboratory of bioinformatics of RNA Structure and Transcriptome Regulation, Berlin Institute for Medical Systems Biology, Max Delbrück Center for Molecular Medicine, Robert-Rössle-Str. 10, 13125 Berlin, Germany.; Department of Biology, Chemistry and Pharmacy, Institute of Chemistry and Biochemistry, Thielallee 63, Freie Universität Berlin, 14195 Berlin, Germany.

Subjects: Software* ; Computational Biology*/Computational Biology*/Computational Biology*/methods ; RNA*/RNA*/RNA*/metabolism

  • Source: Nucleic acids research [Nucleic Acids Res] 2025 Apr 10; Vol. 53 (7).Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Quantification of subcellular RNA localization through direct detection of RNA oxidation.

  • Authors : Lo HG; Department of Biochemistry and Molecular Genetics, University of Colorado Anschutz Medical Campus, Aurora, CO, 80045, United States.; RNA Bioscience Initiative, University of Colorado Anschutz Medical Campus, Aurora, CO, 80045, United States.

Subjects: RNA*/RNA*/RNA*/metabolism ; RNA*/RNA*/RNA*/genetics ; RNA*/RNA*/RNA*/chemistry

  • Source: Nucleic acids research [Nucleic Acids Res] 2025 Feb 27; Vol. 53 (5).Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Toward the use of nanopore RNA sequencing technologies in the clinic: challenges and opportunities.

  • Authors : Katopodi XL; Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain.; Universitat Pompeu Fabra (UPF), Barcelona, Spain.

Subjects: Nanopore Sequencing*/Nanopore Sequencing*/Nanopore Sequencing*/methods ; Nanopore Sequencing*/Nanopore Sequencing*/Nanopore Sequencing*/trends ; Sequence Analysis, RNA*/Sequence Analysis, RNA*/Sequence Analysis, RNA*/methods

  • Source: Nucleic acids research [Nucleic Acids Res] 2025 Feb 27; Vol. 53 (5).Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

SHAPEwarp-web: sequence-agnostic search for structurally homologous RNA regions across databases of chemical probing data.

  • Authors : Scholten NR; School for Life Science and Technology, Hanze University of Applied Sciences, 9747 AS Groningen, The Netherlands.; Haandrikman D

Subjects: RNA*/RNA*/RNA*/chemistry ; Software* ; Internet*

  • Source: Nucleic acids research [Nucleic Acids Res] 2024 Jul 05; Vol. 52 (W1), pp. W362-W367.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Modeling and cleaning RNA-seq data significantly improve detection of differentially expressed genes.

  • Authors : Deyneko IV; Laboratory of Functional Genomics, К.А. Timiryazev Institute of Plant Physiology RAS, Moscow, Russia, 127276. .; Mustafaev ON

Subjects: RNA* ; High-Throughput Nucleotide Sequencing*; RNA-Seq

  • Source: BMC bioinformatics [BMC Bioinformatics] 2022 Nov 16; Vol. 23 (1), pp. 488. Date of Electronic Publication: 2022 Nov 16.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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Academic Journal

BEERS2: RNA-Seq simulation through high fidelity in silico modeling.

  • Authors : Brooks TG; Institute for Translational Medicine and Therapeutics, University of Pennsylvania, PA, USA.; Lahens NF

Subjects: RNA*/RNA*/RNA*/genetics ; Genome*; RNA-Seq

  • Source: Briefings in bioinformatics [Brief Bioinform] 2024 Mar 27; Vol. 25 (3).Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

AStruct: detection of allele-specific RNA secondary structure in structuromic probing data.

  • Authors : Xu Q; State Key Laboratory of Oncology in South China, Cancer Center, Collaborative Innovation Center for Cancer Medicine, School of Life Sciences, Sun Yat-sen University, Guangzhou, 510060, China.; Department of Data Science, Dana-Farber Cancer Institute, Boston, MA, 02215, USA.

Subjects: RNA*/RNA*/RNA*/genetics ; RNA*/RNA*/RNA*/chemistry ; Gene Expression Regulation*

  • Source: BMC bioinformatics [BMC Bioinformatics] 2024 Mar 01; Vol. 25 (1), pp. 91. Date of Electronic Publication: 2024 Mar 01.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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  • 1-10 of  1,728 results for ""High-Throughput Nucleotide Sequencing""