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Academic Journal

The evaluation of transcription factor binding site prediction tools in human and Arabidopsis genomes.

  • Authors : Wanniarachchi DV; Department of Plant Sciences, Faculty of Science, University of Colombo, Colombo 03, Sri Lanka.; Viswakula S

Subjects: Arabidopsis*/Arabidopsis*/Arabidopsis*/genetics ; Arabidopsis*/Arabidopsis*/Arabidopsis*/metabolism ; Transcription Factors*/Transcription Factors*/Transcription Factors*/metabolism

  • Source: BMC bioinformatics [BMC Bioinformatics] 2024 Dec 02; Vol. 25 (1), pp. 371. Date of Electronic Publication: 2024 Dec 02.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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Academic Journal

The developmental and evolutionary characteristics of transcription factor binding site clustered regions based on an explainable machine learning model.

  • Authors : Ouyang Z; Academy of Military Medical Sciences, Beijing 100850, China.; Liu F

Subjects: Transcription Factors*/Transcription Factors*/Transcription Factors*/metabolism ; Transcription Factors*/Transcription Factors*/Transcription Factors*/genetics ; Machine Learning*

  • Source: Nucleic acids research [Nucleic Acids Res] 2024 Jul 22; Vol. 52 (13), pp. 7610-7626.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

PAPerFly: Partial Assembly-based Peak Finder for ab initio binding site reconstruction.

  • Authors : Faltejsková K; Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo náměstí 542/2, 160 00, Prague, Czech Republic. .; Computer Science Institute, Faculty of Mathematics and Physics, Charles University, Malostranské náměstí 25, 118 00, Prague, Czech Republic. .

Subjects: Algorithms* ; Transcription Factors*/Transcription Factors*/Transcription Factors*/metabolism; Binding Sites

  • Source: BMC bioinformatics [BMC Bioinformatics] 2023 Dec 19; Vol. 24 (1), pp. 487. Date of Electronic Publication: 2023 Dec 19.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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Academic Journal

Discovery of a non-canonical GRHL1 binding site using deep convolutional and recurrent neural networks.

  • Authors : Proft S; Exploratory Diagnostic Sciences, Berlin Institute of Health, Charité - Universitätsmedizin Berlin, 10117, Berlin, Germany.; Institute of Medical Genetics and Human Genetics, Charité - Universitätsmedizin Berlin, Freie Universität Berlin and Humboldt-Universität zu Berlin, 13353, Berlin, Germany.

Subjects: Transcription Factors*/Transcription Factors*/Transcription Factors*/metabolism ; Gene Expression Regulation*; Humans

  • Source: BMC genomics [BMC Genomics] 2023 Dec 04; Vol. 24 (1), pp. 736. Date of Electronic Publication: 2023 Dec 04.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164

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Academic Journal

Transcription Factor Binding Site Prediction: Finding the Point from Many Data.

  • Authors : Ishimori M; Department of Agricultural and Environmental Biology, Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo, 113-8657 Japan.

Subjects: Transcription Factors*/Transcription Factors*/Transcription Factors*/metabolism; Protein Binding ; Binding Sites

  • Source: Plant & cell physiology [Plant Cell Physiol] 2022 Oct 31; Vol. 63 (10), pp. 1324-1325.Publisher: Oxford University Press Country of Publication: Japan NLM ID: 9430925 Publication Model: Print Cited Medium: Internet ISSN: 1471-9053

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Academic Journal

KLF14 and SREBF-1 Binding Site Associations with Orphan Receptor Promoters in Metabolic Syndrome.

Subjects: *G protein coupled receptors; *Binding sites; *Genetic regulation

  • Source: International Journal of Molecular Sciences. Apr2025, Vol. 26 Issue 7, p2849. 35p.

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Academic Journal

DeepGRN: prediction of transcription factor binding site across cell-types using attention-based deep neural networks.

  • Authors : Chen C; Electrical Engineering and Computer Science Department, University of Missouri, Columbia, MO, 65211, USA.; Hou J

Subjects: Chromatin* ; Neural Networks, Computer* ; Protein Binding*

  • Source: BMC bioinformatics [BMC Bioinformatics] 2021 Feb 01; Vol. 22 (1), pp. 38. Date of Electronic Publication: 2021 Feb 01.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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Academic Journal

Genome-wide identification, transcriptional profiling, and miRNA-binding site analysis of the LBD gene family in the camphor tree

Subjects: camphor tree; Lateral Organ Boundaries (LOB); microRNA (miRNA)

  • Source: Frontiers in Plant Science, Vol 16 (2025)

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Academic Journal

A suboptimal OCT4-SOX2 binding site facilitates the naïve-state specific function of a Klf4 enhancer.

Subjects: *Transcription factors; *Binding sites; *STAT proteins

  • Source: PLoS ONE. 9/30/2024, Vol. 19 Issue 9, p1-24. 24p.

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Academic Journal

SWI/SNF subunit BAF155 N-terminus structure informs the impact of cancer-associated mutations and reveals a potential drug binding site.

  • Authors : Allen MD; UKRI MRC Laboratory of Molecular Biology, Cambridge, UK.; Freund SMV

Subjects: Mutation*; Neoplasms/Neoplasms/Neoplasms/*genetics ; Pharmaceutical Preparations/Pharmaceutical Preparations/Pharmaceutical Preparations/*metabolism

  • Source: Communications biology [Commun Biol] 2021 May 05; Vol. 4 (1), pp. 528. Date of Electronic Publication: 2021 May 05.Publisher: Nature Publishing Group UK Country of Publication: England NLM ID: 101719179 Publication Model: Electronic Cited Medium: Internet ISSN:

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  • 1-10 of  8,641 results for ""Binding site""