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Applications of the Vendi score in genomic epidemiology

• Authors : Nielsen, Bjarke Frost; Pasarkar, Amey P.; Yang, Qiqi

Subjects: Populations and Evolution; Quantitative Methods

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Genomic Epidemiology for Estimating Pathogen Burden in a Population

• Authors : W. Tanner Porter; David M. Engelthaler; Crystal M. Hepp

Subjects: Molecular Epidemiology; SARS-CoV-2; COVID-19

• Source: Emerg Infect DisEmerging Infectious Diseases, Vol 31, Iss 13, Pp 22-24 (2025)

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Antimicrobial susceptibilities and genomic epidemiology of Neisseria gonorrhoeae in Stockholm, Sweden

• Authors : Vestberg, N; Bhattarai, KH; Fang, H

• Source: EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES. 42(9):1073-1079

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Genomic Epidemiology of Clonal Complex 1 Staphylococcus aureus in Remote Western Australian Communities.

• Authors : Yee, Nicholas Wei Tek¹ (AUTHOR); Coombs, Geoffrey Wallace^1,2 (AUTHOR); Stegger, Marc^3,4 (AUTHOR)

• Source: International Journal of Microbiology. 11/19/2025, Vol. 2025, p1-10. 10p.

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Integrating genomic epidemiology and deep mutational scanning data for prevalence forecasting of SARS-CoV-2 Omicron lineages.

• Authors : Lei, Zhong-yi^1,2 (AUTHOR); Zhang, Xiao-min² (AUTHOR); Han, Jia-lu^3,4 (AUTHOR)

• Source: PLoS ONE. 11/3/2025, Vol. 20 Issue 10, p1-20. 20p.

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Genomic Epidemiology of SARS-CoV-2 in Ukraine from May 2022 to March 2024 Reveals Omicron Variant Dynamics.

• Authors : Iaruchyk, Anna¹ (AUTHOR) ; Farlow, Jason² (AUTHOR); Skrypnyk, Artem^1,3 (AUTHOR)

• Source: Viruses (1999-4915). Jul2025, Vol. 17 Issue 7, p1000. 12p.

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Genomic Epidemiology of Respiratory Syncytial Virus in a New England Hospital System, 2024 Open Access.

• Authors : LaVerriere, Emily^1,2 (AUTHOR); Behar, Sasha^1,2 (AUTHOR); Sher-Jan, Cole^1,2 (AUTHOR)

• Source: Open Forum Infectious Diseases. Jun2025, Vol. 12 Issue 6, p1-8. 8p.

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Plasmid-associated clonal expansion drives department-preference transmission of carbapenem-resistant Klebsiella pneumoniae in Xi’an, China: a genomic epidemiology study

• Authors : Kai Luo; Shuyan Liu; Jie Feng

Subjects: CRKP; clinical and genomic epidemiology; antibiotic resistance

• Source: Frontiers in Cellular and Infection Microbiology, Vol 15 (2025)

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Widely dispersed clonal expansion of multi-fungicide-resistant Aspergillus fumigatus limits genomic epidemiology prospects

• Authors : Eveline Snelders; Brandi N. Celia-Sanchez; Ymke C. Nederlof

Subjects: genomic epidemiology; Aspergillus fumigatus; antifungal resistance

• Source: mBio, Vol 16, Iss 6 (2025)

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Genomic Epidemiology of Carbapenemase-Producing and Colistin-Resistant Enterobacteriaceae among Sepsis Patients in Ethiopia: a Whole-Genome Analysis

• Authors : Legese, Melese Hailu; Asrat, Daniel; Mihret, Adane

Subjects: whole-genome sequencing; genomic epidemiology; carbapenemase producing

• Source: Antimicrobial Agents and Chemotherapy. 66(8)

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