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Order-Dependent Dissimilarity Measures on Phylogenetic Trees

• Authors : Linz, Simone; John, Katherine St.; Semple, Charles

Subjects: Populations and Evolution; Combinatorics

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Inference of maximum parsimony phylogenetic trees with model-based classical and quantum methods

• Authors : Zhang, Jiawei; Chen, Yibo; Zhou, Yang

Subjects: Quantum Physics

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Convergence-divergence models: Generalizations of phylogenetic trees modeling gene flow over time

• Authors : Mitchell, Jonathan D.; Holland, Barbara R.

Subjects: Quantitative Biology - Populations and Evolution; Mathematics - Statistics Theory; Quantitative Biology - Quantitative Methods

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Vector encoding of phylogenetic trees by ordered leaf attachment

• Authors : Richman, Harry; Zhang, Cheng; Matsen IV, Frederick A.

Subjects: Quantitative Biology - Populations and Evolution; Mathematics - Combinatorics; 92B10, 05C05, 05C85, 68W40

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Coconvex characters on collections of phylogenetic trees

• Authors : Czabarka, Eva; Kelk, Steven; Moulton, Vincent

Subjects: Mathematics - Combinatorics; Quantitative Biology - Populations and Evolution

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PhyloVAE: Unsupervised Learning of Phylogenetic Trees via Variational Autoencoders

• Authors : Xie, Tianyu; Richman, Harry; Gao, Jiansi

Subjects: Statistics - Machine Learning; Computer Science - Machine Learning; Quantitative Biology - Populations and Evolution

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Making mathematical online resources FAIR: at the example of small phylogenetic trees

• Authors : Bacher, Tabea; Garrote-López, Marina; Görgen, Christiane

Subjects: History and Overview; Populations and Evolution

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'gitana' (phyloGenetic Imaging Tool for Adjusting Nodes and other Arrangements), a tool for plotting phylogenetic trees into ready-to-publish figures.

• Authors : Galisteo, Cristina^1,2 (AUTHOR); de la Haba, Rafael R.¹ (AUTHOR)

• Source: BMC Bioinformatics. 6/5/2025, Vol. 26 Issue 1, p1-7. 7p.

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PhyloScape: interactive and scalable visualization platform for phylogenetic trees.

• Authors : Wang, Jiajia¹ (AUTHOR); Zhang, Bo^1,2 (AUTHOR); Zheng, Linglu¹ (AUTHOR)

• Source: BMC Bioinformatics. 7/10/2025, Vol. 26 Issue 1, p1-12. 12p.

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Constructing phylogenetic trees for microbiome data analysis: A mini-review

• Authors : Ruitao Liu; Xi Qiao; Yushu Shi

Subjects: 16S sequencing; 0301 basic medicine; 03 medical and health sciences

• Source: Comput Struct Biotechnol JComputational and Structural Biotechnology Journal, Vol 23, Iss, Pp 3859-3868 (2024)

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