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Academic Journal

Uncovering the roles of DNA hemi-methylation in transcriptional regulation using MspJI-assisted hemi-methylation sequencing.

Authors : Xiong X; CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China.; China National Center for Bioinformation, Beijing 100101, China.

Subjects: DNA Methylation*/DNA Methylation*/DNA Methylation*/genetics ; Sequence Analysis, DNA*/Sequence Analysis, DNA*/Sequence Analysis, DNA*/methods; Animals

Source: Nucleic acids research [Nucleic Acids Res] 2024 Mar 21; Vol. 52 (5), pp. e24.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Exome-wide benchmark of difficult-to-sequence regions using short-read next-generation DNA sequencing.

Authors : Hijikata A; Laboratory of Computational Genomics, School of Life Sciences, Tokyo University of Pharmacy and Life Sciences, Hachioji, Tokyo 192-0392, Japan.; Suyama M

Subjects: Exome*/Exome*/Exome*/genetics ; High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/methods ; High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/standards

Source: Nucleic acids research [Nucleic Acids Res] 2024 Jan 11; Vol. 52 (1), pp. 114-124.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

A critical spotlight on the paradigms of FFPE-DNA sequencing.

Authors : Steiert TA; Institute of Clinical Molecular Biology, Christian-Albrechts-University and University Medical Center Schleswig-Holstein, Kiel 24105, Germany.; Parra G

Subjects: Sequence Analysis, DNA*/Sequence Analysis, DNA*/Sequence Analysis, DNA*/methods; DNA/DNA/DNA/genetics ; DNA/DNA/DNA/analysis

Source: Nucleic acids research [Nucleic Acids Res] 2023 Aug 11; Vol. 51 (14), pp. 7143-7162.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

BioSeq-Diabolo: Biological sequence similarity analysis using Diabolo.

Authors : Li H; School of Computer Science and Technology, Beijing Institute of Technology, Beijing, China.; Liu B

Subjects: Software* ; Sequence Analysis, DNA*/Sequence Analysis, DNA*/Sequence Analysis, DNA*/methods ; Sequence Analysis, Protein*/Sequence Analysis, Protein*/Sequence Analysis, Protein*/methods

Source: PLoS computational biology [PLoS Comput Biol] 2023 Jun 20; Vol. 19 (6), pp. e1011214. Date of Electronic Publication: 2023 Jun 20 (Print Publication: 2023).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

Highly accurate long reads are crucial for realizing the potential of biodiversity genomics.

Authors : Hotaling S; Department of Watershed Sciences, Utah State University, Logan, UT, USA. .; Wilcox ER

Subjects: Genomics*/Genomics*/Genomics*/methods ; Genomics*/Genomics*/Genomics*/standards ; Genomics*/Genomics*/Genomics*/trends

Source: BMC genomics [BMC Genomics] 2023 Mar 16; Vol. 24 (1), pp. 117. Date of Electronic Publication: 2023 Mar 16.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164

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Academic Journal

De novo sequencing, diploid assembly, and annotation of the black carpenter ant, Camponotus pennsylvanicus, and its symbionts by one person for $1000, using nanopore sequencing.

Authors : Faulk C; Department of Animal Science, University of Minnesota, College of Food, Agricultural and Natural Resource Sciences, 1334 Eckles Ave, 350 ABLMS, St. Paul, MN 55108, USA.

Subjects: Ants*/Ants*/Ants*/genetics ; Ants*/Ants*/Ants*/microbiology ; High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/economics

Source: Nucleic acids research [Nucleic Acids Res] 2023 Jan 11; Vol. 51 (1), pp. 17-28.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Mito-SiPE is a sequence-independent and PCR-free mtDNA enrichment method for accurate ultra-deep mitochondrial sequencing.

Authors : Walsh DJ; Gene and Environment Interaction Section, National Human Genome Research Institute, NIH, Bethesda, MD, USA.; School of Biotechnology, Dublin City University, Dublin, Ireland.

Subjects: DNA, Mitochondrial*/DNA, Mitochondrial*/DNA, Mitochondrial*/genetics ; Genome, Mitochondrial* ; Sequence Analysis, DNA*/Sequence Analysis, DNA*/Sequence Analysis, DNA*/methods

Source: Communications biology [Commun Biol] 2022 Nov 19; Vol. 5 (1), pp. 1269. Date of Electronic Publication: 2022 Nov 19.Publisher: Nature Publishing Group UK Country of Publication: England NLM ID: 101719179 Publication Model: Electronic Cited Medium: Internet ISSN:

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Academic Journal

High quality mapping of chromatin at or near the nuclear lamina from small numbers of cells reveals cell cycle and developmental changes of chromatin at the nuclear periphery.

Authors : Tran JR; Department of Embryology, Carnegie Institution for Science, 3520 San Martin Drive, Baltimore, MD 21218, USA.; Zheng X

Subjects: Chromatin*/Chromatin*/Chromatin*/genetics ; Chromatin*/Chromatin*/Chromatin*/metabolism ; Nuclear Lamina*/Nuclear Lamina*/Nuclear Lamina*/metabolism

Source: Nucleic acids research [Nucleic Acids Res] 2022 Nov 11; Vol. 50 (20), pp. e117.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

sgcocaller and comapr: personalised haplotype assembly and comparative crossover map analysis using single-gamete sequencing data.

Authors : Lyu R; Bioinformatics and Cellular Genomics, St Vincent's Institute of Medical Research, 9 Princes Street, Fitzroy, Victoria 3065, Australia.; Melbourne Integrative Genomics/School of Mathematics and Statistics, Faculty of Science, The University of Melbourne, Building 184, Royal Parade, Parkville, Victoria 3010, Australia.

Subjects: High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/methods ; Polymorphism, Single Nucleotide* ; Sequence Analysis, DNA*/Sequence Analysis, DNA*/Sequence Analysis, DNA*/methods

Source: Nucleic acids research [Nucleic Acids Res] 2022 Nov 11; Vol. 50 (20), pp. e118.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Ancient genomes and West Eurasian history.

Authors : Arbuckle BS; Department of Anthropology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.; Schwandt Z

Subjects: Genome, Human* ; Sequence Analysis, DNA*; Asia

Source: Science (New York, N.Y.) [Science] 2022 Aug 26; Vol. 377 (6609), pp. 922-923. Date of Electronic Publication: 2022 Aug 25.Publisher: American Association for the Advancement of Science Country of Publication: United States NLM ID: 0404511 Publication Model: Print-Electronic

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